Gene detail information of Glyur002827s00042822.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 4.00E-15 | F-box and associated interaction domains-containing protein |
| NR | ACU18590.1 | 1.48E-153 | unknown [Glycine max] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 6.00E-16 | F-box protein CPR30 |
| trEMBL | tr|C6T9T8|C6T9T8_SOYBN | 6.00E-154 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02827 | 4977 | 6905 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002827s00042822.1 | PF00646.28 | F-box | 47 | 86 | 7.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.257 |
| SRR1783600 | control | 0.314 |
| SRR1783602 | moderate drought stress | 0.072 |
| SRR1811619 | moderate drought stress | 0.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.286 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.202 |
| SRR2967015 | Control (Tissue:root) | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.054 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.272 |
| SRR9715742 | Root | 0.049 |
| SRR9715743 | Root | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.719 |
| SRR8749028 | MeJA induced 9h | 1.333 |
| SRR8749029 | MeJA induced 9h | 0.510 |
| SRR8749030 | Uninduced | 1.527 |
| SRR8749031 | Uninduced | 2.552 |
| SRR8749032 | Uninduced | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.096 |
| SRR8400027 | Control-Root | 0.111 |