Gene detail information of Glyur002834s00043435.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25220.1 | 2.00E-127 | KNOTTED1-like homeobox gene 3 |
| NR | XP_004514061.1 | 0 | PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|P48000|KNAT3_ARATH | 3.00E-163 | Homeobox protein knotted-1-like 3 |
| trEMBL | tr|A0A072V8D4|A0A072V8D4_MEDTR | 0 | Class II knotted-like homeobox protein {ECO:0000313|EMBL:KEH38097.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02834 | 14128 | 22713 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002834s00043435.1 | PF03790.8 | KNOX1 | 98 | 140 | 9.50E-18 |
| Glyur002834s00043435.1 | PF03791.8 | KNOX2 | 153 | 204 | 2.90E-20 |
| Glyur002834s00043435.1 | PF03789.8 | ELK | 262 | 283 | 4.10E-07 |
| Glyur002834s00043435.1 | PF05920.6 | Homeobox_KN | 302 | 341 | 2.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.103 |
| SRR1783600 | control | 30.456 |
| SRR1783602 | moderate drought stress | 53.684 |
| SRR1811619 | moderate drought stress | 53.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.190 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 315.849 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 308.895 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 82.007 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 82.019 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 146.651 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 146.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 70.485 |
| SRR2868004 | Drought Stress(Tissue:root) | 84.562 |
| SRR2967015 | Control (Tissue:root) | 94.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 87.568 |
| SRR9715740 | Leave | 89.399 |
| SRR9715741 | Leave | 90.096 |
| SRR9715739 | Root | 17.737 |
| SRR9715742 | Root | 46.604 |
| SRR9715743 | Root | 43.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.734 |
| SRR8749028 | MeJA induced 9h | 38.095 |
| SRR8749029 | MeJA induced 9h | 22.359 |
| SRR8749030 | Uninduced | 9.832 |
| SRR8749031 | Uninduced | 5.377 |
| SRR8749032 | Uninduced | 5.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 60.237 |
| SRR8400027 | Control-Root | 42.364 |