Gene detail information of Glyur002845s00038974.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16390.1 | 4.00E-107 | SNF2 domain-containing protein / helicase domain-containing protein |
| NR | XP_004510995.1 | 0 | PREDICTED: transcriptional regulator ATRX homolog [Cicer arietinum] |
| COG | YP_005012062.1 | 4.00E-16 | SNF2-related protein [Niastella koreensis GR20-10] |
| Swissprot | tr|Q9M297|CLSY1_ARATH | 4.00E-39 | SNF2 domain-containing protein CLASSY 1 |
| trEMBL | tr|K7LWL4|K7LWL4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36460.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02845 | 27043 | 32319 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10875 | RAD54L, RAD54 | EC:3.6.4.- | Homologous recombination | map03440 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002845s00038974.1 | PF00176.18 | SNF2_N | 315 | 478 | 7.50E-18 |
| Glyur002845s00038974.1 | PF00271.26 | Helicase_C | 508 | 579 | 6.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.013 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.036 |
| SRR8749028 | MeJA induced 9h | 0.023 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.065 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.037 |
| SRR8400027 | Control-Root | 0.004 |