Gene detail information of Glyur002854s00044943.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27010.1 | 1.00E-56 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 |
| NR | XP_007161676.1 | 1.81E-136 | hypothetical protein PHAVU_001G089100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LSD5|TCP20_ARATH | 8.00E-84 | Transcription factor TCP20 |
| trEMBL | tr|V7CWP0|V7CWP0_PHAVU | 7.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:ESW33670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02854 | 15815 | 17377 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
| EAR motif-containing Proteins | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002854s00044943.1 | PF03634.8 | TCP | 61 | 152 | 2.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.975 |
| SRR1783600 | control | 52.521 |
| SRR1783602 | moderate drought stress | 87.646 |
| SRR1811619 | moderate drought stress | 88.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.467 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.566 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 46.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 71.353 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.812 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.792 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 45.907 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.860 |
| SRR2967015 | Control (Tissue:root) | 51.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.208 |
| SRR9715740 | Leave | 43.341 |
| SRR9715741 | Leave | 31.694 |
| SRR9715739 | Root | 19.208 |
| SRR9715742 | Root | 31.023 |
| SRR9715743 | Root | 28.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.347 |
| SRR8749028 | MeJA induced 9h | 36.615 |
| SRR8749029 | MeJA induced 9h | 22.381 |
| SRR8749030 | Uninduced | 6.759 |
| SRR8749031 | Uninduced | 8.274 |
| SRR8749032 | Uninduced | 13.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 64.499 |
| SRR8400027 | Control-Root | 59.534 |