Gene detail

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Gene detail information of Glyur002860s00039116.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	2.00E-150	Leucine-rich repeat protein kinase family protein
NR	KHN36903.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_001192956.1	6.00E-37	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|K7M260\|K7M260_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G34310.2}

Sequence

Transcript Sequence

>Glyur002860s00039116.1
ACCCAACTCAGTCAGTTTTATCTTGGGGGTAATCATATATCTGGGCAAATTCCTATCGAATTGGGAAATCTAATTAGCTTAATTCTCCTGACCACGGAAAAGAACCGTTTGGAAGGGATGATTCCAACAACTTTTGCAAAGCTTCAGAAGATGCAACTGTTAGATTTGAGAGGAAACAAACTGTCANGAGATATACCAGCCTCCNTAGGCAACCTCACTCAATTGTATTACTTGGGTATAGGAGACAATTTGTTGGAAGGAAGTATTCCTCATAGTANNGGGAACTGCNAAAAATTACAATATCTAGACCTTTGGCAAAACAAGCTTAGTGGAGCGATACCCTTAGATATTTTTAGTCTTTCGTCTTTAACAATGGGNCTAGACTTATCACAAAACTCATTGAGTGGCAGTCTACCTAAGGAAGTGGGTCAGTTACAAAATATTGGGCTNTTTGATGTCTCTGAAAATNATCTGTCTGGTGAAATTCCTGGAACCATTGGAGAATGCGCAAGCTTGGAGTCTCTTTATTTGCACGGGAANCTCTTCCGCGGAACCATACCGTCTTCTTTGGCTTCGCTCAAAGGCCTTCAAGATTTAGACCTATCACNAAATAACTTATCAGGATCAATTCCTAAAGGTCTACAAAACATTTCGTTCCTGGAATACTTCAATGTATCTTTTAACATGTTGGACGGCGAGGTGCCAACCAAAGGTGTCTTTGGAAATGCAAGTGGGTTAGCAGTAACANGAAACAATAACCTTTGTGGGGGTATTTCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGGTATGAAACCAGCAAAACACCATAATTTCAAATTGATAGCGGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATACTGCTATTTATTCTAACTATCTTCTGGATGAGGAAAAGAAACAAGAAACCATCTTNTGATTCACCAACAATTGATCAACTGGCTGTGGTTTCATATCAAAACCTTTACAACGGAACCGATGGGTTCTCAACTAGAAACTTGATAGGTTCTGGAAATTTTGGCTCTGTCTACAAAGGAACTCTTGACTCAGAAGATAGAGTTGTTGNCATAAAGGTTCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTTCTGAATGTAATACACTCAAAAATGTTAGACATCGAAATCTAGTTAAGATTTTAACATGTTGTTCCAGCACAGATTACAAAGGTCAAGAATTCAAAGCTCTAGTTTTTGAGTGCATGGAGAATGGAAGCTTAGAAGGTTNGTTGCATCCCACAACAGAAACTACAGATCAGCCAAAATCATTAAACCTTGAGCAAAGGTTAAATATTATTGTTGATGTTGCTTCGGCATTTCATTATCTTCACTNTGAATGTTTACAACCTATCATTCATTGTGATATAAAGCCTAGCAATGTTCTTCTTGATGATTGCCTGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCGAGTGTTGGAGTCTCACTGATTCAAAGTAGCACAATTGGAATAAAGGGGACAATTGGTTATGCACCCCCAGGTATGNCANNATATTCTTCTATTAAGTTATCAAATTTTTCATTTTCAAGTTTTAAGTACGGAATGGGTTCTGAGGTGTCAATTGAAGGCGACATGTATAGCTTTGGAATTCTGGTATTAGAAATGTTAACAGGAAGGAGACCCACAGATGAAATTTTTAAAGATGGTCATAACCTTCACAATCATGTCAAAGATTCAATTTCAAATGACCTTCTGCAGATTGTAGACCCCGTAATTCTCTCCTGTGGATTAGAACATGCAACTGACATTGGCAACCTTGGCAATGTGCATCCTAATATGGAAAAATGTTTACTTTCACTTTTTAAGATTGCACTTGCCTGTTCAGCTGATTCGCCAAATGAAAGAATAAGTATGGTTGATGTCATTAGGGAGCTTAATCTAATCAACAGTTTCTTTCCTTCGGGGTTCTAATGGAGGCAAGCTGCATTATAATGACAAAACACATGATATAGAGATGCCATCATACTATTGCTACCAAATATCCTTTCCCTCTTTCTTACTGTGTTTCCCCCCTGAATTGGTTAGTAGCATGTGCAATGCATGAGTTTTTTTTTATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02860	4	2235	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002860s00039116.1	PF00560.28	LRR_1	52	71	0.76
Glyur002860s00039116.1	PF00560.28	LRR_1	98	119	0.55
Glyur002860s00039116.1	PF00560.28	LRR_1	196	216	0.1
Glyur002860s00039116.1	PF00069.20	Pkinase	338	585	6.40E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.046
SRR1783600	control	1.992
SRR1783602	moderate drought stress	3.578
SRR1811619	moderate drought stress	3.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.564
DRR006520	Root Summer glycyrrhizin high producing strain	1.628
DRR006521	Root Winter glycyrrhizin high producing strain	0.677
DRR006522	Root Winter glycyrrhizin high producing strain	0.660
DRR006523	Root Summer glycyrrhizin low producing strain	0.855
DRR006524	Root Summer glycyrrhizin low producing strain	0.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.304
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.069
SRR2868004	Drought Stress(Tissue:root)	3.052
SRR2967015	Control (Tissue:root)	3.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.579
SRR9715740	Leave	0.769
SRR9715741	Leave	2.212
SRR9715739	Root	0.557
SRR9715742	Root	2.380
SRR9715743	Root	1.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.705
SRR8400027	Control-Root	1.831