Gene detail information of Glyur002867s00037021.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14850.1 | 0 | Alg9-like mannosyltransferase family |
| NR | XP_004507791.1 | 0 | PREDICTED: GPI mannosyltransferase 3-like [Cicer arietinum] |
| COG | YP_005015751.1 | 6.00E-11 | Alg9-like mannosyltransferase family protein [Tannerella forsythia ATCC 43037] |
| Swissprot | tr|A8MR93|ALG12_ARATH | 2.00E-08 | Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase |
| trEMBL | tr|I1LVW1|I1LVW1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G01500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02867 | 2513 | 5814 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT22 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05286 | PIGB | EC:2.4.1.- | Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | map00563 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002867s00037021.1 | PF03901.12 | Glyco_transf_22 | 45 | 450 | 7.40E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.282 |
| SRR1783600 | control | 6.299 |
| SRR1783602 | moderate drought stress | 6.649 |
| SRR1811619 | moderate drought stress | 6.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.694 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.499 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.897 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.551 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.373 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.012 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.360 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.949 |
| SRR2967015 | Control (Tissue:root) | 11.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.231 |
| SRR9715740 | Leave | 8.292 |
| SRR9715741 | Leave | 6.088 |
| SRR9715739 | Root | 3.772 |
| SRR9715742 | Root | 4.936 |
| SRR9715743 | Root | 4.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.241 |
| SRR8749028 | MeJA induced 9h | 5.493 |
| SRR8749029 | MeJA induced 9h | 2.616 |
| SRR8749030 | Uninduced | 3.438 |
| SRR8749031 | Uninduced | 1.230 |
| SRR8749032 | Uninduced | 1.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.180 |
| SRR8400027 | Control-Root | 11.424 |