Gene detail information of Glyur002867s00037025.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57740.13.00E-172XB3 ortholog 2 in Arabidopsis thaliana
NRAES92434.20E3 ubiquitin-protein ligase XBOS32 [Medicago truncatula]
COGYP_003205668.12.00E-21hypothetical protein DAMO_0764 [Candidatus Methylomirabilis oxyfera]
Swissprottr|Q6KAE5|XB32_ORYSJ0Probable E3 ubiquitin-protein ligase XBOS32
trEMBLtr|G7JEC0|G7JEC0_MEDTR0E3 ubiquitin-protein ligase XBOS32 {ECO:0000313|EMBL:AES92434.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold028671540921866-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002867s00037025.1PF12796.2Ank_2201122.10E-19
Glyur002867s00037025.1PF00023.25Ank1171382.10E-05
Glyur002867s00037025.1PF00023.25Ank1792091.90E-08
Glyur002867s00037025.1PF12796.2Ank_22112675.30E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.254
SRR1783600control11.461
SRR1783602moderate drought stress16.142
SRR1811619moderate drought stress15.994

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.333
DRR006520Root Summer glycyrrhizin high producing strain11.557
DRR006521Root Winter glycyrrhizin high producing strain22.799
DRR006522Root Winter glycyrrhizin high producing strain21.612
DRR006523Root Summer glycyrrhizin low producing strain16.682
DRR006524Root Summer glycyrrhizin low producing strain16.662
DRR006525Leaf Summer glycyrrhizin high producing strain11.115
DRR006526Leaf Summer glycyrrhizin high producing strain11.166

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.409
SRR2868004Drought Stress(Tissue:root)57.059
SRR2967015Control (Tissue:root)48.012

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.455
SRR9715740Leave23.861
SRR9715741Leave34.738
SRR9715739Root13.533
SRR9715742Root24.551
SRR9715743Root21.981

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.336
SRR8749028MeJA induced 9h18.163
SRR8749029MeJA induced 9h17.155
SRR8749030Uninduced25.861
SRR8749031Uninduced25.397
SRR8749032Uninduced24.058

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.669
SRR8400027Control-Root30.109

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved