Gene detail information of Glyur002868s00034874.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01710.16.00E-84Acyl-CoA thioesterase family protein
NRKHM99382.11.49E-161Acyl-coenzyme A thioesterase 8 [Glycine soja]
COGYP_003103347.12.00E-34acyl-CoA thioesterase II [Actinosynnema mirum DSM 43827]
trEMBLtr|I1N3P6|I1N3P6_SOYBN2.00E-157Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46610.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold028682270029027+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01068ACOT1_2_4 EC:3.1.2.2 Fatty acid elongation map00062
Biosynthesis of unsaturated fatty acidsmap01040


Gene Ontology

biological_process

GO:0006637  acyl-CoA metabolic process


molecular_function

GO:0047617  acyl-CoA hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002868s00034874.1PF00027.24cNMP_binding34861.50E-07
Glyur002868s00034874.1PF13622.14HBT_31462901.10E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.167
SRR1783600control16.684
SRR1783602moderate drought stress13.763
SRR1811619moderate drought stress13.925

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.694
DRR006520Root Summer glycyrrhizin high producing strain20.725
DRR006521Root Winter glycyrrhizin high producing strain13.188
DRR006522Root Winter glycyrrhizin high producing strain12.046
DRR006523Root Summer glycyrrhizin low producing strain14.856
DRR006524Root Summer glycyrrhizin low producing strain14.961
DRR006525Leaf Summer glycyrrhizin high producing strain12.384
DRR006526Leaf Summer glycyrrhizin high producing strain12.607

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.709
SRR2868004Drought Stress(Tissue:root)32.967
SRR2967015Control (Tissue:root)30.753

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.238
SRR9715740Leave13.805
SRR9715741Leave17.636
SRR9715739Root11.630
SRR9715742Root12.871
SRR9715743Root11.979

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.567
SRR8749028MeJA induced 9h11.411
SRR8749029MeJA induced 9h9.405
SRR8749030Uninduced13.238
SRR8749031Uninduced9.486
SRR8749032Uninduced8.549

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.806
SRR8400027Control-Root32.148

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved