Gene detail

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Gene detail information of Glyur002871s00041488.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78060.1	2.00E-175	Glycosyl hydrolase family protein
NR	XP_003615019.1	0	hypothetical protein MTR_5g062650 [Medicago truncatula]
COG	YP_004464029.1	1.00E-94	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q9SGZ5\|BXL7_ARATH	0	Probable beta-D-xylosidase 7 (Precursor)
trEMBL	tr\|G7KA75\|G7KA75_MEDTR	0	Glycoside hydrolase family 3 amino-terminal domain protein {ECO:0000313\|EMBL:AES97977.1}

Sequence

Transcript Sequence

>Glyur002871s00041488.1
GTTCCCGTCAGATAGACGAAGACGCTGGTCTTTAAAGTTAAAACACACATGCTCTGTTCTTTCTGCAACCCGCATTGCCACTCCGTGATTCAATCACACAGTATGGGTCTCTCATCATCCATTACCATTACCTTGGTCTCTTTCCTTTCGCTTTTGCTCACCCACCACCACCCCGTCCATGCCGAGTCAACTCAGCCACCCTATGCCTGTGGCACGTNACACTCACACTATGCCTTCTGCAACCCCAAGCTTCGCATTGCCCAAAGAGCCAAGGACCTCGTGTCACGACTCACCCTTGACGAGAAACTCGCCCAACTCGTCAACTCGGCACCCCCGATTCCCCGACTCGGGATCCCCGGTTACCAGTGGTGGAACGAAGCGTTGCACGGTGTCGCCGATGCCGGTCTCGGCATCAGACTCAACGGCACCATCAAATCCGCAACTAGCTTCCCTCAAGTCATTCTCACCGCTGCTTCCTTCGACCCCAACCTCTGGTACCAAATTAGTAAGGGGATGACATTTTGGGCACCGAACATAAACATTTTCAGGGACCCGAGATGGGGGAGAGGGCAAGAGACGGCAGGGGAAGACCCTTTGGTGAATGCAAAGTACGCTGTGGCGTATGTGAGAGGGCTTCAAGGGGATTCCTTTAACGGAGGGAACAAACTCATTGGACAGCGTCTTCAGGCCTCTGCTTGTTGCAAGCACTTCACCGCCTATGATTTGGACCATTGGAAGGGTATCGATCGCTTTGTCTTCGATGCTCGCGTCACTATGCAAGATTTGGCGGACACGTATCAGCCCCCATTTCAGAGTTGCATACAGAAAGGACGTGCCAGTGGGATAATGTATATTACGTCGGATTGTGGAGCAGTCGCTATCATACACGATGAGCAAGGTTATGCNAAAACTGCAGAGGATGCTGTAGCCGATGTCCTTCGTGCTGGGATGGATGTGGAGTGTGGTAGTTACATGACTAAGCATGCCAAATCAGCAGTGTTACAGAAGAAAGTACCTATACCTCAAATCAACCGTGCCCTTCAGAATCTGTTCTCTATTAGAATACGGCTAGGCCTATTTGATGGAAATCCCACCAAGCTCACATTTGGCACNATTGGTCCCAATCAAGTTTGCTCTAAACAAAACCTACAACTAGCTCTAGAAGCTGCAAGAAGTGGCATTGTCCTCTTGAAGAACACTGCTTCACTTCTCCCACTTCCAAAATCAAACCCCAATAGTGTTTCCCTTGCAGTGATAGGCCCCAATGCTAATGCTTCTTCACAAGTTGTTCTAGGAAACTATCATGGCCGTCCTTGTAAATTGGTGTCACTAATGCAAGGCTTTGAGCACTATGCTAAGAACACCATTTATCACCCTGGCTGTAGTGATGGAACACAATGTGCTTATGCTCAAATAGACCAGGCAGTGGAAGTAGCGAAAAAGGTGGATTATGTGGTGTTGGTTATGGGATTGGATCNGAGTCCTGTTGATATCACTTCAGCCAAGTTTGACAACAAAATTGGGGGCATCTTGTGGGCTGGTTATCCAGGTGAACTTGGAGGAGTGGCCTTGGCCCAGATTATCTTTGGGGACTATAACCCAGGGGGGAGACTACCAATTACATGGTACCAAAAGATTTCATCAGAATACCAATGACAGACATGAGGATGAGAGCTAATCCAGCATCAGGCTATCCAGGGAGAACCTACCGTTTTTACACAGGTCCAAAGGTGTATGAATTTGGCTATGGCCTAAGCTACTCAAAATATTCCTACGAGTTCATTTCTGTCACANGGGAAAACCTTCACATCAACCAATCATCTACCCATTTGATGGTAGTTGAAAACTCTGAAACCATTCGTTACAAACTGGTTTCGGAGTTGGGTGAAGAAACGTGCCAAAGCATGTCATTCTCAGTCACCTTGGGAGTTAAAAATCAGGGAAGCATGGTTGGGAAGCATCCGGTGTTGTTGTTTATGAAGCAGGCGAAACATAGGAACGGAAATCCGGTGAAACAGTTAGTGGGTTTTCAAAGTGTGAAGCTTGAAGCAGGTGAAAGGGCTCAAGTGGGATTTGAACTAAGCCCATGTGAGCATCTTAGCAGAGCNAATGAGGCTGGTGCTAAGGTGATTGAAGAGGGGTCTTATTCGTTGCTTGTGGGGGAGGAAGAGTACCCTATAAATATCATTGTCTGATGCAACAAAAGATTGAGTCTTTAAATCTCGTAAAGGCGTGAATTAAGCTATTAGAAAGCTCGATTTGCTCTTGATGAAAGAANCATTATCGTTATTTTCAGCATTTCACATCTGAGTAGTGCTTTTTACTTTGAAAACATACATTCAGAAAACTCATACACAAATAAATGGGGTGATCGACAATTGAATGTTTGTGTGGGAAGATTTCAAAGCGCACGCGTGGCGATCGGTTGAGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02871	24891	32352	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002871s00041488.1	PF00933.16	Glyco_hydro_3	85	267	1.00E-27
Glyur002871s00041488.1	PF00933.16	Glyco_hydro_3	268	335	2.50E-05
Glyur002871s00041488.1	PF01915.17	Glyco_hydro_3_C	378	474	9.60E-14
Glyur002871s00041488.1	PF01915.17	Glyco_hydro_3_C	483	530	9.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.581
SRR1783600	control	4.740
SRR1783602	moderate drought stress	2.419
SRR1811619	moderate drought stress	2.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.966
DRR006520	Root Summer glycyrrhizin high producing strain	24.122
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	7.229
DRR006524	Root Summer glycyrrhizin low producing strain	7.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.764
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.695

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	29.218
SRR2868004	Drought Stress(Tissue:root)	14.288
SRR2967015	Control (Tissue:root)	15.465

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.780
SRR9715740	Leave	2.567
SRR9715741	Leave	0.985
SRR9715739	Root	1.819
SRR9715742	Root	8.627
SRR9715743	Root	6.623

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.391
SRR8749028	MeJA induced 9h	0.055
SRR8749029	MeJA induced 9h	0.098
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.858
SRR8400027	Control-Root	15.685