Gene detail information of Glyur002876s00038790.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53970.17.00E-158Tyrosine transaminase family protein
NRXP_003628555.10Tyrosine aminotransferase [Medicago truncatula]
COGYP_004628567.12.00E-39tyrosine/nicotianamine aminotransferase [Thermodesulfobacterium geofontis OPF15]
Swissprottr|Q9FN30|TAT2_ARATH0Probable aminotransferase TAT2
trEMBLtr|G7LDS3|G7LDS3_MEDTR0Tyrosine/nicotianamine family aminotransferase {ECO:0000313|EMBL:AET03031.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02876528610448-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00815TAT EC:2.6.1.5 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960
Novobiocin biosynthesismap00401


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002876s00038790.1PF00155.16Aminotran_1_2421911.00E-19
Glyur002876s00038790.1PF00155.16Aminotran_1_21933703.00E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.880
SRR1783600control0.864
SRR1783602moderate drought stress0.669
SRR1811619moderate drought stress0.687

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.808
DRR006520Root Summer glycyrrhizin high producing strain0.805
DRR006521Root Winter glycyrrhizin high producing strain106.887
DRR006522Root Winter glycyrrhizin high producing strain103.321
DRR006523Root Summer glycyrrhizin low producing strain15.900
DRR006524Root Summer glycyrrhizin low producing strain15.794
DRR006525Leaf Summer glycyrrhizin high producing strain44.225
DRR006526Leaf Summer glycyrrhizin high producing strain44.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.914
SRR2868004Drought Stress(Tissue:root)13.208
SRR2967015Control (Tissue:root)26.605

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.642
SRR9715740Leave31.285
SRR9715741Leave30.512
SRR9715739Root0.000
SRR9715742Root0.066
SRR9715743Root0.203

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.003
SRR8749028MeJA induced 9h98.752
SRR8749029MeJA induced 9h34.656
SRR8749030Uninduced126.398
SRR8749031Uninduced200.296
SRR8749032Uninduced153.833

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.983
SRR8400027Control-Root2.104

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved