Gene detail information of Glyur002878s00043954.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27200.1 | 3.00E-141 | Domain of unknown function (DUF23) |
| NR | KHN01138.1 | 0 | UPF0392 protein [Glycine soja] |
| COG | YP_003831732.1 | 5.00E-16 | glycosyl transferase 2 [Butyrivibrio proteoclasticus B316] |
| Swissprot | tr|B9S2H4|Y232_RICCO | 0 | UPF0392 protein RCOM_0530710 |
| trEMBL | tr|I1JBV1|I1JBV1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G03040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02878 | 18186 | 20148 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002878s00043954.1 | PF01697.22 | Glyco_transf_92 | 272 | 500 | 8.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.778 |
| SRR1783600 | control | 3.868 |
| SRR1783602 | moderate drought stress | 3.084 |
| SRR1811619 | moderate drought stress | 2.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.534 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.457 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.068 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.432 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.298 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.816 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.914 |
| SRR2967015 | Control (Tissue:root) | 8.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.290 |
| SRR9715740 | Leave | 0.846 |
| SRR9715741 | Leave | 3.015 |
| SRR9715739 | Root | 1.665 |
| SRR9715742 | Root | 7.029 |
| SRR9715743 | Root | 6.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.186 |
| SRR8749028 | MeJA induced 9h | 2.171 |
| SRR8749029 | MeJA induced 9h | 2.335 |
| SRR8749030 | Uninduced | 2.453 |
| SRR8749031 | Uninduced | 5.802 |
| SRR8749032 | Uninduced | 2.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.872 |
| SRR8400027 | Control-Root | 33.436 |