Gene detail information of Glyur002881s00043901.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12900.21.00E-62glyceraldehyde 3-phosphate dehydrogenase A subunit 2
NRXP_002321065.27.15E-114hypothetical protein POPTR_0014s13660g [Populus trichocarpa]
COGYP_007053884.15.00E-84glyceraldehyde 3-phosphate dehydrogenase (NADP+) [Rivularia sp. PCC 7116]
Swissprottr|P19866|G3PA_SPIOL1.00E-101Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Precursor)
trEMBLtr|A9PI59|A9PI59_POPTR3.00E-114Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold028812766628196-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05298GAPA EC:1.2.1.13 Carbon metabolism map01200
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002881s00043901.1PF02800.15Gp_dh_C71541.80E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress0.000
SRR1811619moderate drought stress0.000

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.380
DRR006520Root Summer glycyrrhizin high producing strain0.452
DRR006521Root Winter glycyrrhizin high producing strain0.419
DRR006522Root Winter glycyrrhizin high producing strain0.252
DRR006523Root Summer glycyrrhizin low producing strain0.673
DRR006524Root Summer glycyrrhizin low producing strain0.572
DRR006525Leaf Summer glycyrrhizin high producing strain1711.860
DRR006526Leaf Summer glycyrrhizin high producing strain1697.038

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.626
SRR2868004Drought Stress(Tissue:root)28.543
SRR2967015Control (Tissue:root)4.398

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1467.624
SRR9715740Leave1893.948
SRR9715741Leave1008.837
SRR9715739Root0.261
SRR9715742Root0.827
SRR9715743Root0.636

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.934
SRR8749028MeJA induced 9h3.305
SRR8749029MeJA induced 9h1.949
SRR8749030Uninduced1.130
SRR8749031Uninduced0.170
SRR8749032Uninduced3.933

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.041
SRR8400027Control-Root3.984

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved