Gene detail information of Glyur002881s00043902.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13870.15.00E-146xyloglucan endotransglucosylase/hydrolase 5
NRXP_003624550.10Xyloglucan endotransglucosylase [Medicago truncatula]
COGYP_005432194.13.00E-13putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprottr|Q8LNZ5|XTHB_PHAAN0Probable xyloglucan endotransglucosylase/hydrolase protein B (Precursor)
trEMBLtr|Q2HRU5|Q2HRU5_MEDTR0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold028812824329850+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002881s00043902.1PF00722.16Glyco_hydro_16282098.50E-61
Glyur002881s00043902.1PF06955.7XET_C2332831.40E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.599
SRR1783600control52.063
SRR1783602moderate drought stress11.829
SRR1811619moderate drought stress11.609

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.779
DRR006520Root Summer glycyrrhizin high producing strain28.910
DRR006521Root Winter glycyrrhizin high producing strain1.082
DRR006522Root Winter glycyrrhizin high producing strain0.554
DRR006523Root Summer glycyrrhizin low producing strain15.626
DRR006524Root Summer glycyrrhizin low producing strain15.556
DRR006525Leaf Summer glycyrrhizin high producing strain0.751
DRR006526Leaf Summer glycyrrhizin high producing strain1.114

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)92.834
SRR2868004Drought Stress(Tissue:root)26.282
SRR2967015Control (Tissue:root)40.784

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.809
SRR9715740Leave0.307
SRR9715741Leave0.710
SRR9715739Root12.134
SRR9715742Root12.120
SRR9715743Root11.620

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h94.413
SRR8749028MeJA induced 9h31.602
SRR8749029MeJA induced 9h59.735
SRR8749030Uninduced23.250
SRR8749031Uninduced6.591
SRR8749032Uninduced34.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.913
SRR8400027Control-Root48.709

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved