Gene detail information of Glyur002900s00042861.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26945.1 | 8.00E-25 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003532055.1 | 7.36E-42 | PREDICTED: transcription factor bHLH135 [Glycine max] |
| Swissprot | tr|F4JCN9|PRE4_ARATH | 9.00E-34 | Transcription factor PRE4 |
| trEMBL | tr|V7C8Y0|V7C8Y0_PHAVU | 9.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:ESW25813.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02900 | 25778 | 27487 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002900s00042861.1 | PF00010.21 | HLH | 21 | 59 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.116 |
| SRR1783600 | control | 2.406 |
| SRR1783602 | moderate drought stress | 3.410 |
| SRR1811619 | moderate drought stress | 3.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.588 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.584 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.537 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.460 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.019 |
| SRR2967015 | Control (Tissue:root) | 0.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.747 |
| SRR9715740 | Leave | 1.839 |
| SRR9715741 | Leave | 2.677 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.229 |
| SRR8749028 | MeJA induced 9h | 0.815 |
| SRR8749029 | MeJA induced 9h | 0.198 |
| SRR8749030 | Uninduced | 0.389 |
| SRR8749031 | Uninduced | 0.665 |
| SRR8749032 | Uninduced | 0.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.959 |
| SRR8400027 | Control-Root | 1.416 |