Gene detail information of Glyur002905s00040691.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G43245.1 | 7.00E-84 | SET domain-containing protein |
| NR | XP_004516216.1 | 0 | PREDICTED: protein SET DOMAIN GROUP 41-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q3ECY6|SDG41_ARATH | 5.00E-108 | Protein SET DOMAIN GROUP 41 |
| trEMBL | tr|G7IQD7|G7IQD7_MEDTR | 0 | SET domain protein {ECO:0000313|EMBL:AES65658.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02905 | 5724 | 9257 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002905s00040691.1 | PF00856.23 | SET | 193 | 286 | 1.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.161 |
| SRR1783600 | control | 2.209 |
| SRR1783602 | moderate drought stress | 3.068 |
| SRR1811619 | moderate drought stress | 2.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.285 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.547 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.398 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.850 |
| SRR2967015 | Control (Tissue:root) | 2.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.109 |
| SRR9715740 | Leave | 1.074 |
| SRR9715741 | Leave | 0.732 |
| SRR9715739 | Root | 0.385 |
| SRR9715742 | Root | 0.521 |
| SRR9715743 | Root | 0.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.839 |
| SRR8749028 | MeJA induced 9h | 1.276 |
| SRR8749029 | MeJA induced 9h | 0.654 |
| SRR8749030 | Uninduced | 0.272 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.877 |
| SRR8400027 | Control-Root | 2.402 |