Gene detail information of Glyur002907s00033935.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G58440.10FAD/NAD(P)-binding oxidoreductase family protein
NRXP_006606979.10PREDICTED: squalene monooxygenase-like [Glycine max]
COGYP_004346032.13.00E-100Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|I1J3Z3|I1J3Z3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA0041S00260.5}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0290730939285-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00511SQLE, ERG1 EC:1.14.14.17 Steroid biosynthesis map00100
Sesquiterpenoid and triterpenoid biosynthesismap00909


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004506  squalene monooxygenase activity

GO:0016491  oxidoreductase activity

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002907s00033935.2PF13450.1NAD_binding_864902.30E-05
Glyur002907s00033935.2PF08491.5SE2114831.50E-124


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control80.402
SRR1783600control80.807
SRR1783602moderate drought stress25.442
SRR1811619moderate drought stress25.776

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.795
DRR006520Root Summer glycyrrhizin high producing strain48.262
DRR006521Root Winter glycyrrhizin high producing strain15.278
DRR006522Root Winter glycyrrhizin high producing strain15.266
DRR006523Root Summer glycyrrhizin low producing strain18.413
DRR006524Root Summer glycyrrhizin low producing strain18.333
DRR006525Leaf Summer glycyrrhizin high producing strain4.355
DRR006526Leaf Summer glycyrrhizin high producing strain4.464

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.673
SRR2868004Drought Stress(Tissue:root)34.330
SRR2967015Control (Tissue:root)38.352

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.786
SRR9715740Leave9.568
SRR9715741Leave12.051
SRR9715739Root90.732
SRR9715742Root96.000
SRR9715743Root96.144

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h111.229
SRR8749028MeJA induced 9h76.876
SRR8749029MeJA induced 9h167.740
SRR8749030Uninduced182.820
SRR8749031Uninduced69.047
SRR8749032Uninduced96.212

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.716
SRR8400027Control-Root103.631

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved