Gene detail information of Glyur002914s00043996.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26440.1 | 1.00E-129 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003595381.1 | 0 | hypothetical protein MTR_2g044810 [Medicago truncatula] |
| COG | YP_004596660.1 | 1.00E-32 | Pectinesterase [Halopiger xanaduensis SH-6] |
| Swissprot | tr|O48711|PME12_ARATH | 2.00E-172 | Pectinesterase 12 (Precursor) |
| trEMBL | tr|A2Q3Z8|A2Q3Z8_MEDTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02914 | 20605 | 23013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002914s00043996.1 | PF04043.10 | PMEI | 45 | 180 | 4.60E-22 |
| Glyur002914s00043996.1 | PF01095.14 | Pectinesterase | 213 | 336 | 2.40E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.482 |
| SRR1783600 | control | 0.333 |
| SRR1783602 | moderate drought stress | 0.104 |
| SRR1811619 | moderate drought stress | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.297 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.332 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.774 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.224 |
| SRR2967015 | Control (Tissue:root) | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.011 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.035 |
| SRR8400027 | Control-Root | 0.093 |