Gene detail information of Glyur002932s00039305.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37770.1 | 0 | 1-amino-cyclopropane-1-carboxylate synthase 8 |
| NR | AAD41083.1 | 0 | 1-aminocyclopropane-1-carboxylic acid synthase [Vigna radiata] |
| COG | YP_004582080.1 | 1.00E-65 | 1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|Q00257|1A12_CUCMA | 0 | 1-aminocyclopropane-1-carboxylate synthase CMA101 |
| trEMBL | tr|Q9SEE8|Q9SEE8_VIGRR | 0 | 1-aminocyclopropane-1-carboxylic acid synthase {ECO:0000313|EMBL:AAD41083.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02932 | 28271 | 29986 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01762 | ACS | EC:4.4.1.14 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002932s00039305.1 | PF00155.16 | Aminotran_1_2 | 61 | 446 | 2.40E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.074 |
| SRR1783600 | control | 0.056 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.147 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.074 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.733 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.387 |
| SRR2967015 | Control (Tissue:root) | 0.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.406 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.232 |
| SRR9715742 | Root | 0.356 |
| SRR9715743 | Root | 0.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.175 |
| SRR8749028 | MeJA induced 9h | 1.171 |
| SRR8749029 | MeJA induced 9h | 0.875 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.052 |
| SRR8749032 | Uninduced | 0.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.059 |
| SRR8400027 | Control-Root | 0.173 |