Gene detail information of Glyur002941s00036701.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46930.1 | 4.00E-173 | Pectinacetylesterase family protein |
| NR | XP_003626088.1 | 0 | Pectin acetylesterase [Medicago truncatula] |
| trEMBL | tr|G7KVG3|G7KVG3_MEDTR | 0 | Pectinacetylesterase family protein {ECO:0000313|EMBL:AES82306.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02941 | 6730 | 12659 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002941s00036701.1 | PF03283.8 | PAE | 80 | 431 | 1.00E-160 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.889 |
| SRR1783600 | control | 15.952 |
| SRR1783602 | moderate drought stress | 9.930 |
| SRR1811619 | moderate drought stress | 9.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.814 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.823 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.780 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.609 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.660 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.483 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.669 |
| SRR2967015 | Control (Tissue:root) | 24.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.204 |
| SRR9715740 | Leave | 2.558 |
| SRR9715741 | Leave | 4.003 |
| SRR9715739 | Root | 8.120 |
| SRR9715742 | Root | 11.692 |
| SRR9715743 | Root | 12.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.416 |
| SRR8749028 | MeJA induced 9h | 34.842 |
| SRR8749029 | MeJA induced 9h | 28.116 |
| SRR8749030 | Uninduced | 14.681 |
| SRR8749031 | Uninduced | 4.411 |
| SRR8749032 | Uninduced | 10.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 47.052 |
| SRR8400027 | Control-Root | 37.653 |