Gene detail information of Glyur002942s00044115.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71695.1 | 7.00E-17 | Peroxidase superfamily protein |
| NR | KEH26056.1 | 5.84E-49 | peroxidase family protein [Medicago truncatula] |
| Swissprot | tr|Q96520|PER12_ARATH | 3.00E-19 | Peroxidase 12 (Precursor) |
| trEMBL | tr|A0A072U9H3|A0A072U9H3_MEDTR | 2.00E-49 | Peroxidase family protein {ECO:0000313|EMBL:KEH26056.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02942 | 17658 | 18857 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002942s00044115.1 | PF00141.18 | peroxidase | 53 | 119 | 8.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.415 |
| SRR1783600 | control | 4.361 |
| SRR1783602 | moderate drought stress | 3.173 |
| SRR1811619 | moderate drought stress | 2.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.306 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 377.689 |
| SRR2868004 | Drought Stress(Tissue:root) | 253.426 |
| SRR2967015 | Control (Tissue:root) | 332.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.214 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.059 |
| SRR9715739 | Root | 5.686 |
| SRR9715742 | Root | 1.973 |
| SRR9715743 | Root | 2.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.186 |
| SRR8749028 | MeJA induced 9h | 1.377 |
| SRR8749029 | MeJA induced 9h | 1.909 |
| SRR8749030 | Uninduced | 0.233 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 44.119 |
| SRR8400027 | Control-Root | 28.595 |