Gene detail information of Glyur002948s00043488.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20170.1 | 7.00E-176 | Domain of unknown function (DUF23) |
| NR | XP_004488232.1 | 0 | PREDICTED: uncharacterized protein LOC101489232 [Cicer arietinum] |
| trEMBL | tr|I1MGS7|I1MGS7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02948 | 28078 | 31566 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT92 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002948s00043488.1 | PF01697.22 | Glyco_transf_92 | 259 | 472 | 1.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 90.000 |
| SRR1783600 | control | 90.255 |
| SRR1783602 | moderate drought stress | 128.228 |
| SRR1811619 | moderate drought stress | 126.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.522 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.431 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 153.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 149.336 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 75.034 |
| SRR2868004 | Drought Stress(Tissue:root) | 71.295 |
| SRR2967015 | Control (Tissue:root) | 62.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 232.354 |
| SRR9715740 | Leave | 122.127 |
| SRR9715741 | Leave | 157.409 |
| SRR9715739 | Root | 31.602 |
| SRR9715742 | Root | 115.358 |
| SRR9715743 | Root | 91.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.672 |
| SRR8749028 | MeJA induced 9h | 16.910 |
| SRR8749029 | MeJA induced 9h | 18.702 |
| SRR8749030 | Uninduced | 13.389 |
| SRR8749031 | Uninduced | 3.003 |
| SRR8749032 | Uninduced | 2.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 155.027 |
| SRR8400027 | Control-Root | 231.077 |