Gene detail information of Glyur002949s00046127.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G25560.12.00E-109AP2/B3 transcription factor family protein
NRXP_004514325.10PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Cicer arietinum]
Swissprottr|Q9C6M5|RAVL1_ARATH3.00E-141AP2/ERF and B3 domain-containing transcription repressor TEM1
trEMBLtr|I1J6Q5|I1J6Q5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G22260.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0294986369781+


Gene family

Gene familysubfamily
Transcription Factors FamilyRAV


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002949s00046127.1PF00847.15AP2681162.20E-11
Glyur002949s00046127.1PF02362.16B32023103.00E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.229
SRR1783600control2.911
SRR1783602moderate drought stress16.045
SRR1811619moderate drought stress15.792

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.770
DRR006520Root Summer glycyrrhizin high producing strain23.348
DRR006521Root Winter glycyrrhizin high producing strain36.789
DRR006522Root Winter glycyrrhizin high producing strain35.002
DRR006523Root Summer glycyrrhizin low producing strain57.257
DRR006524Root Summer glycyrrhizin low producing strain56.480
DRR006525Leaf Summer glycyrrhizin high producing strain54.440
DRR006526Leaf Summer glycyrrhizin high producing strain53.561

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.685
SRR2868004Drought Stress(Tissue:root)77.151
SRR2967015Control (Tissue:root)143.262

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave140.168
SRR9715740Leave151.444
SRR9715741Leave154.506
SRR9715739Root39.174
SRR9715742Root48.812
SRR9715743Root45.583

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h297.375
SRR8749028MeJA induced 9h326.027
SRR8749029MeJA induced 9h229.209
SRR8749030Uninduced121.964
SRR8749031Uninduced113.986
SRR8749032Uninduced108.385

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.318
SRR8400027Control-Root21.366

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved