Gene detail information of Glyur002953s00038823.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G16890.25.00E-74ubiquitin-conjugating enzyme 36
NRNP_001235055.19.09E-92uncharacterized protein LOC100500231 [Glycine max]
COGYP_008797956.19.00E-18ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q9FZ48|UBC36_ARATH7.00E-94Ubiquitin-conjugating enzyme E2 36
trEMBLtr|F6H2P3|F6H2P3_VITVI1.00E-93Putative uncharacterized protein {ECO:0000313|EMBL:CCB46261.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02953891813961-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10580UBE2N, BLU, UBC13 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002953s00038823.1PF00179.21UQ_con91407.70E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.783
SRR1783600control8.060
SRR1783602moderate drought stress14.242
SRR1811619moderate drought stress13.340

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.433
DRR006520Root Summer glycyrrhizin high producing strain9.100
DRR006521Root Winter glycyrrhizin high producing strain22.487
DRR006522Root Winter glycyrrhizin high producing strain19.898
DRR006523Root Summer glycyrrhizin low producing strain9.719
DRR006524Root Summer glycyrrhizin low producing strain9.985
DRR006525Leaf Summer glycyrrhizin high producing strain6.798
DRR006526Leaf Summer glycyrrhizin high producing strain6.810

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.183
SRR2868004Drought Stress(Tissue:root)18.387
SRR2967015Control (Tissue:root)18.149

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.750
SRR9715740Leave8.108
SRR9715741Leave7.195
SRR9715739Root1.749
SRR9715742Root3.075
SRR9715743Root3.557

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.870
SRR8749028MeJA induced 9h20.978
SRR8749029MeJA induced 9h27.166
SRR8749030Uninduced29.255
SRR8749031Uninduced30.897
SRR8749032Uninduced24.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.288
SRR8400027Control-Root17.930

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved