Gene detail information of Glyur002953s00038824.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14940.10phosphoenolpyruvate carboxylase 3
NRKEH19559.10phosphoenolpyruvate carboxylase [Medicago truncatula]
COGYP_008045770.10phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
Swissprottr|Q02909|CAPP1_SOYBN0Phosphoenolpyruvate carboxylase, housekeeping isozyme
trEMBLtr|A0A072TPW7|A0A072TPW7_MEDTR0Phosphoenolpyruvate carboxylase {ECO:0000313|EMBL:KEH19559.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold029532135929107-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01595ppc EC:4.1.1.31 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0015977  carbon fixation


molecular_function

GO:0003824  catalytic activity

GO:0008964  phosphoenolpyruvate carboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002953s00038824.1PF00311.12PEPcase1638204.10E-241


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control82.539
SRR1783600control82.939
SRR1783602moderate drought stress70.056
SRR1811619moderate drought stress69.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain87.265
DRR006520Root Summer glycyrrhizin high producing strain86.013
DRR006521Root Winter glycyrrhizin high producing strain58.672
DRR006522Root Winter glycyrrhizin high producing strain56.643
DRR006523Root Summer glycyrrhizin low producing strain60.576
DRR006524Root Summer glycyrrhizin low producing strain60.807
DRR006525Leaf Summer glycyrrhizin high producing strain51.805
DRR006526Leaf Summer glycyrrhizin high producing strain51.247

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)219.315
SRR2868004Drought Stress(Tissue:root)176.794
SRR2967015Control (Tissue:root)209.500

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave62.050
SRR9715740Leave65.791
SRR9715741Leave69.979
SRR9715739Root128.992
SRR9715742Root128.717
SRR9715743Root127.611

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.744
SRR8749028MeJA induced 9h68.790
SRR8749029MeJA induced 9h47.341
SRR8749030Uninduced30.181
SRR8749031Uninduced29.042
SRR8749032Uninduced27.757

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root173.124
SRR8400027Control-Root188.801

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved