Gene detail information of Glyur002954s00038142.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58770.1 | 3.00E-93 | Undecaprenyl pyrophosphate synthetase family protein |
| NR | XP_003544879.1 | 1.01E-141 | PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max] |
| COG | NP_487035.1 | 4.00E-80 | UDP pyrophosphate synthase [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q56Y11|DDPS2_ARATH | 7.00E-115 | Dehydrodolichyl diphosphate synthase 2 |
| trEMBL | tr|I1MBA3|I1MBA3_SOYBN | 4.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02954 | 1752 | 5903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | EC:2.5.1.87 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002954s00038142.1 | PF01255.14 | Prenyltransf | 115 | 335 | 1.10E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.385 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.125 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.435 |
| SRR2967015 | Control (Tissue:root) | 0.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.752 |
| SRR9715740 | Leave | 7.078 |
| SRR9715741 | Leave | 6.218 |
| SRR9715739 | Root | 0.032 |
| SRR9715742 | Root | 0.140 |
| SRR9715743 | Root | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.033 |
| SRR8400027 | Control-Root | 0.316 |