Gene detail information of Glyur002955s00037989.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G64660.13.00E-108methionine gamma-lyase
NRXP_003536171.12.19E-151PREDICTED: methionine gamma-lyase [Glycine max]
COGYP_003195849.13.00E-63cystathionine beta-lyase [Robiginitalea biformata HTCC2501]
Swissprottr|Q9SGU9|MGL_ARATH3.00E-133Methionine gamma-lyase
trEMBLtr|V7CTV7|V7CTV7_PHAVU2.00E-147Uncharacterized protein {ECO:0000313|EMBL:ESW33579.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold029553059031351+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01761E4.4.1.11 EC:4.4.1.11 Cysteine and methionine metabolism map00270
Selenocompound metabolismmap00450


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002955s00037989.1PF01053.15Cys_Met_Meta_PP512542.80E-55


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.918
SRR1783600control7.765
SRR1783602moderate drought stress21.603
SRR1811619moderate drought stress21.116

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.452
DRR006520Root Summer glycyrrhizin high producing strain26.699
DRR006521Root Winter glycyrrhizin high producing strain52.793
DRR006522Root Winter glycyrrhizin high producing strain52.027
DRR006523Root Summer glycyrrhizin low producing strain20.290
DRR006524Root Summer glycyrrhizin low producing strain20.481
DRR006525Leaf Summer glycyrrhizin high producing strain57.906
DRR006526Leaf Summer glycyrrhizin high producing strain55.818

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.063
SRR2868004Drought Stress(Tissue:root)49.806
SRR2967015Control (Tissue:root)105.878

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave185.460
SRR9715740Leave121.139
SRR9715741Leave183.096
SRR9715739Root157.946
SRR9715742Root122.875
SRR9715743Root131.856

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h61.764
SRR8749028MeJA induced 9h55.651
SRR8749029MeJA induced 9h51.659
SRR8749030Uninduced19.252
SRR8749031Uninduced18.186
SRR8749032Uninduced38.619

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.130
SRR8400027Control-Root24.288

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved