Gene detail information of Glyur002972s00039715.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80820.1 | 3.00E-31 | cinnamoyl coa reductase |
| NR | XP_003604239.1 | 7.40E-51 | Cinnamoyl CoA reductase [Medicago truncatula] |
| COG | YP_002017749.1 | 1.00E-15 | NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1] |
| Swissprot | tr|Q9SAH9|CCR2_ARATH | 3.00E-37 | Cinnamoyl-CoA reductase 2 |
| trEMBL | tr|G7JEE6|G7JEE6_MEDTR | 3.00E-51 | Cinnamoyl-CoA reductase-like protein {ECO:0000313|EMBL:AES86436.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02972 | 469 | 1323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09753 | CCR | EC:1.2.1.44 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002972s00039715.1 | PF01370.16 | Epimerase | 15 | 89 | 3.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.996 |
| SRR1783600 | control | 5.584 |
| SRR1783602 | moderate drought stress | 2.866 |
| SRR1811619 | moderate drought stress | 2.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.617 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.471 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.085 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.510 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.475 |
| SRR2967015 | Control (Tissue:root) | 26.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.060 |
| SRR9715740 | Leave | 6.913 |
| SRR9715741 | Leave | 40.476 |
| SRR9715739 | Root | 14.477 |
| SRR9715742 | Root | 49.435 |
| SRR9715743 | Root | 35.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.472 |
| SRR8749028 | MeJA induced 9h | 1.221 |
| SRR8749029 | MeJA induced 9h | 1.707 |
| SRR8749030 | Uninduced | 3.592 |
| SRR8749031 | Uninduced | 0.841 |
| SRR8749032 | Uninduced | 0.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.363 |
| SRR8400027 | Control-Root | 24.138 |