Gene detail information of Glyur002976s00038387.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57660.10nuclear RNA polymerase A1
NRXP_006588921.10PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine max]
COGYP_008797579.13.00E-130DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P18616|NRPB1_ARATH5.00E-98DNA-directed RNA polymerase II subunit 1
trEMBLtr|I1L9X1|I1L9X1_SOYBN0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02976110917696+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02999RPA1, POLR1A EC:2.7.7.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
RNA polymerasemap03020


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003899  DNA-directed RNA polymerase activity

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002976s00038387.1PF04997.7RNA_pol_Rpb1_1102046.80E-24
Glyur002976s00038387.1PF04997.7RNA_pol_Rpb1_13234262.00E-07
Glyur002976s00038387.1PF00623.15RNA_pol_Rpb1_24306142.70E-54
Glyur002976s00038387.1PF04983.13RNA_pol_Rpb1_36188233.50E-31
Glyur002976s00038387.1PF05000.12RNA_pol_Rpb1_48929759.40E-21
Glyur002976s00038387.1PF04998.12RNA_pol_Rpb1_598316124.30E-88


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.727
SRR1783600control9.757
SRR1783602moderate drought stress22.847
SRR1811619moderate drought stress22.749

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.909
DRR006520Root Summer glycyrrhizin high producing strain9.624
DRR006521Root Winter glycyrrhizin high producing strain10.497
DRR006522Root Winter glycyrrhizin high producing strain10.138
DRR006523Root Summer glycyrrhizin low producing strain9.289
DRR006524Root Summer glycyrrhizin low producing strain9.153
DRR006525Leaf Summer glycyrrhizin high producing strain3.943
DRR006526Leaf Summer glycyrrhizin high producing strain3.951

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.504
SRR2868004Drought Stress(Tissue:root)17.578
SRR2967015Control (Tissue:root)18.741

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.908
SRR9715740Leave8.892
SRR9715741Leave7.960
SRR9715739Root1.031
SRR9715742Root12.125
SRR9715743Root10.165

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.433
SRR8749028MeJA induced 9h13.904
SRR8749029MeJA induced 9h9.603
SRR8749030Uninduced4.616
SRR8749031Uninduced2.012
SRR8749032Uninduced3.012

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.646
SRR8400027Control-Root16.100

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved