Gene detail information of Glyur002981s00038853.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53120.59.00E-112spermidine synthase 3
NRCAM35498.13.80E-176spermine synthase [Lotus japonicus]
COGYP_006760780.17.00E-75spermidine synthase SpeE2 [Desulfobacula toluolica Tol2]
Swissprottr|Q94BN2|SPSY_ARATH4.00E-153Spermine synthase
trEMBLtr|A2VC29|A2VC29_LOTJA1.00E-176Spermine synthase {ECO:0000313|EMBL:CAM35498.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold029811947023773-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00797speE, SRM EC:2.5.1.16 Cysteine and methionine metabolism map00270
Arginine and proline metabolismmap00330
beta-Alanine metabolismmap00410
Glutathione metabolismmap00480


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002981s00038853.1PF01564.12Spermine_synth742932.20E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.488
SRR1783600control12.361
SRR1783602moderate drought stress18.597
SRR1811619moderate drought stress17.094

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.343
DRR006520Root Summer glycyrrhizin high producing strain16.114
DRR006521Root Winter glycyrrhizin high producing strain11.364
DRR006522Root Winter glycyrrhizin high producing strain13.238
DRR006523Root Summer glycyrrhizin low producing strain10.390
DRR006524Root Summer glycyrrhizin low producing strain12.848
DRR006525Leaf Summer glycyrrhizin high producing strain12.797
DRR006526Leaf Summer glycyrrhizin high producing strain12.343

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.026
SRR2868004Drought Stress(Tissue:root)20.594
SRR2967015Control (Tissue:root)19.476

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.427
SRR9715740Leave51.664
SRR9715741Leave42.235
SRR9715739Root11.970
SRR9715742Root15.296
SRR9715743Root16.034

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.533
SRR8749028MeJA induced 9h13.916
SRR8749029MeJA induced 9h12.033
SRR8749030Uninduced9.631
SRR8749031Uninduced5.794
SRR8749032Uninduced10.820

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.958
SRR8400027Control-Root19.618

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved