Gene detail information of Glyur002994s00043324.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57150.1 | 2.00E-61 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003595077.1 | 1.52E-139 | Transcription factor bHLH [Medicago truncatula] |
| Swissprot | tr|Q2HIV9|BH035_ARATH | 1.00E-84 | Transcription factor bHLH35 |
| trEMBL | tr|G7IG90|G7IG90_MEDTR | 6.00E-140 | Transcription factor {ECO:0000313|EMBL:AES65328.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02994 | 23523 | 27251 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002994s00043324.1 | PF00010.21 | HLH | 51 | 93 | 2.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.168 |
| SRR1783600 | control | 11.126 |
| SRR1783602 | moderate drought stress | 8.735 |
| SRR1811619 | moderate drought stress | 8.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 94.435 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 97.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.947 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.526 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.896 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 49.193 |
| SRR2868004 | Drought Stress(Tissue:root) | 67.381 |
| SRR2967015 | Control (Tissue:root) | 44.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 258.994 |
| SRR9715740 | Leave | 162.988 |
| SRR9715741 | Leave | 330.402 |
| SRR9715739 | Root | 31.922 |
| SRR9715742 | Root | 111.814 |
| SRR9715743 | Root | 87.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.341 |
| SRR8749028 | MeJA induced 9h | 0.253 |
| SRR8749029 | MeJA induced 9h | 0.344 |
| SRR8749030 | Uninduced | 13.221 |
| SRR8749031 | Uninduced | 7.773 |
| SRR8749032 | Uninduced | 11.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 33.517 |
| SRR8400027 | Control-Root | 61.156 |