Gene detail information of Glyur002999s00043471.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.17.00E-169Chalcone and stilbene synthase family protein
NRKEH35361.10chalcone and stilbene synthase family protein [Medicago truncatula]
COGYP_004643652.11.00E-42chalcone and stilbene synthase domain-containing protein [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q9SBL5|CHS4_SORBI0Chalcone synthase 4
trEMBLtr|A0A072V123|A0A072V123_MEDTR0Chalcone and stilbene synthase family protein {ECO:0000313|EMBL:KEH35361.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02999796710138+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002999s00043471.1PF00195.14Chal_sti_synt_N42284.30E-116
Glyur002999s00043471.1PF02797.10Chal_sti_synt_C2393877.40E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.261
SRR1783600control0.276
SRR1783602moderate drought stress1.137
SRR1811619moderate drought stress1.190

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.085
DRR006520Root Summer glycyrrhizin high producing strain0.084
DRR006521Root Winter glycyrrhizin high producing strain4.103
DRR006522Root Winter glycyrrhizin high producing strain3.902
DRR006523Root Summer glycyrrhizin low producing strain0.172
DRR006524Root Summer glycyrrhizin low producing strain0.168
DRR006525Leaf Summer glycyrrhizin high producing strain0.109
DRR006526Leaf Summer glycyrrhizin high producing strain0.218

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.571
SRR2868004Drought Stress(Tissue:root)3.587
SRR2967015Control (Tissue:root)4.932

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.083
SRR9715740Leave0.812
SRR9715741Leave5.103
SRR9715739Root0.247
SRR9715742Root0.306
SRR9715743Root0.102

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.162
SRR8749028MeJA induced 9h0.185
SRR8749029MeJA induced 9h0.048
SRR8749030Uninduced4.767
SRR8749031Uninduced4.640
SRR8749032Uninduced0.494

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.368
SRR8400027Control-Root1.372

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved