Gene detail information of Glyur003005s00040666.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02090.1 | 3.00E-08 | SNF2 domain-containing protein / helicase domain-containing protein |
| NR | XP_009375454.1 | 1.81E-07 | PREDICTED: uncharacterized protein LOC103964260 [Pyrus x bretschneideri] |
| Swissprot | tr|Q9ZUL5|CHR19_ARATH | 4.00E-08 | Protein CHROMATIN REMODELING 19 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M5Y3Q2|M5Y3Q2_PRUPE | 3.00E-07 | Uncharacterized protein {ECO:0000313|EMBL:EMJ26415.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03005 | 15545 | 16233 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14439 | SMARCAD1 | EC:3.6.4.12 | Signaling pathways regulating pluripotency of stem cells | map04550 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.158 |
| SRR1783600 | control | 6.987 |
| SRR1783602 | moderate drought stress | 9.858 |
| SRR1811619 | moderate drought stress | 9.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.689 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.070 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.155 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.810 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.632 |
| SRR2967015 | Control (Tissue:root) | 9.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.141 |
| SRR9715740 | Leave | 9.068 |
| SRR9715741 | Leave | 8.867 |
| SRR9715739 | Root | 3.935 |
| SRR9715742 | Root | 6.494 |
| SRR9715743 | Root | 6.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.835 |
| SRR8749028 | MeJA induced 9h | 1.913 |
| SRR8749029 | MeJA induced 9h | 1.453 |
| SRR8749030 | Uninduced | 0.734 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.488 |
| SRR8400027 | Control-Root | 13.847 |