Gene detail information of Glyur003008s00037196.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26140.17.00E-164FTSH protease 4
NRKDP34089.10hypothetical protein JCGZ_07660 [Jatropha curcas]
COGYP_004534092.12.00E-126cell division protease FtsH [Novosphingobium sp. PP1Y]
Swissprottr|Q8LQJ8|FTSH5_ORYSJ0ATP-dependent zinc metalloprotease FTSH 5, mitochondrial (Precursor)
trEMBLtr|A0A067KQI6|A0A067KQI6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP34089.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold030082547630710+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08955YME1 EC:3.4.24.- Mitophagy - yeast map04139


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004222  metalloendopeptidase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003008s00037196.1PF00004.24AAA1422697.10E-40
Glyur003008s00037196.1PF01434.13Peptidase_M413144781.00E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.238
SRR1783600control0.349
SRR1783602moderate drought stress0.275
SRR1811619moderate drought stress0.428

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.054
DRR006525Leaf Summer glycyrrhizin high producing strain0.197
DRR006526Leaf Summer glycyrrhizin high producing strain0.223

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.138
SRR2868004Drought Stress(Tissue:root)1.290
SRR2967015Control (Tissue:root)0.823

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.315
SRR9715740Leave4.962
SRR9715741Leave5.150
SRR9715739Root0.079
SRR9715742Root0.259
SRR9715743Root0.364

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.794
SRR8749028MeJA induced 9h1.280
SRR8749029MeJA induced 9h0.746
SRR8749030Uninduced1.033
SRR8749031Uninduced0.655
SRR8749032Uninduced1.137

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.251
SRR8400027Control-Root0.737

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved