Gene detail information of Glyur003009s00044920.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00150.1 | 3.00E-91 | GRAS family transcription factor |
| NR | XP_004506474.1 | 0 | PREDICTED: scarecrow-like protein 6-like [Cicer arietinum] |
| Swissprot | tr|O81316|SCL6_ARATH | 1.00E-116 | Scarecrow-like protein 6 |
| trEMBL | tr|I1JKU2|I1JKU2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G03760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03009 | 21019 | 23238 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
| EAR motif-containing Proteins | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003009s00044920.1 | PF03514.9 | GRAS | 384 | 738 | 5.60E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.201 |
| SRR1783600 | control | 27.362 |
| SRR1783602 | moderate drought stress | 31.076 |
| SRR1811619 | moderate drought stress | 29.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.648 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.475 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.345 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.768 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.664 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.825 |
| SRR2967015 | Control (Tissue:root) | 20.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.516 |
| SRR9715740 | Leave | 10.054 |
| SRR9715741 | Leave | 9.453 |
| SRR9715739 | Root | 3.482 |
| SRR9715742 | Root | 10.153 |
| SRR9715743 | Root | 9.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.520 |
| SRR8749028 | MeJA induced 9h | 7.854 |
| SRR8749029 | MeJA induced 9h | 3.168 |
| SRR8749030 | Uninduced | 4.419 |
| SRR8749031 | Uninduced | 3.591 |
| SRR8749032 | Uninduced | 3.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.719 |
| SRR8400027 | Control-Root | 14.791 |