Gene detail information of Glyur003023s00037170.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47270.2 | 2.00E-135 | tubby like protein 6 |
| NR | XP_007160744.1 | 0 | hypothetical protein PHAVU_001G013500g [Phaseolus vulgaris] |
| Swissprot | tr|Q6Z2G9|TLP5_ORYSJ | 0 | Tubby-like F-box protein 5 |
| trEMBL | tr|V7CRK5|V7CRK5_PHAVU | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03023 | 19272 | 21335 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003023s00037170.1 | PF00646.28 | F-box | 63 | 116 | 8.80E-10 |
| Glyur003023s00037170.1 | PF01167.13 | Tub | 128 | 422 | 3.00E-96 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.827 |
| SRR1783600 | control | 1.884 |
| SRR1783602 | moderate drought stress | 3.704 |
| SRR1811619 | moderate drought stress | 3.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.713 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.474 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.419 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.327 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.988 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.454 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.578 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.908 |
| SRR2967015 | Control (Tissue:root) | 5.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.123 |
| SRR9715740 | Leave | 0.907 |
| SRR9715741 | Leave | 0.712 |
| SRR9715739 | Root | 0.110 |
| SRR9715742 | Root | 1.229 |
| SRR9715743 | Root | 1.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.979 |
| SRR8749028 | MeJA induced 9h | 3.893 |
| SRR8749029 | MeJA induced 9h | 2.430 |
| SRR8749030 | Uninduced | 0.917 |
| SRR8749031 | Uninduced | 0.346 |
| SRR8749032 | Uninduced | 0.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.677 |
| SRR8400027 | Control-Root | 3.848 |