Gene detail

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Gene detail information of Glyur003027s00040339.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	KHN07496.1	0	Putative leucine-rich repeat receptor-like protein kinase [Glycine soja]
COG	YP_004775215.1	1.00E-60	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|K7MDH1\|K7MDH1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G37900.2}

Sequence

Transcript Sequence

>Glyur003027s00040339.1
ATGATCTTTCTGCAGAAATTTGGGGAGTTGGTCAACTTGAAAGAATTAAGTCTTCTTAGCAATAATTTTACTGGTTCCATCCCTAAGGAAATTACAAAGTTGCATAAGCTAGAGTATCTAGATCTGGGCAACAGTAGTCTCTCTGTCACTGGTCCCATCCTTGAAGAACTCTGGAAGTTGAGGAAGTTAAATGTTCTTTCTCTTTGGCAGTGCAATATCACAGGGCCAATCCCAATTTCTATAGGTAAATTTGCCAACTTGTCATATCTAGAGTTATCACACAACCAAATTTCTGGCCCCATTCCTAGAGAAATTAGGAAGTTGCAGAGCCTAAAGAGTCTACTTCTTTCCAACAACTATCTTGTTGGTTCCATTCCCCAATTCATATGGAACTTGACAAACCTAGAGAATCTACAACTTCACAACAACAATTTCGACTCTCAACACATTCCTCGAGAAATTGAAAAGTTGGTCAACCTGAAGTACTTATTGCTTCGAGGCAATAATTTTTCTGGTTCCATTCCACATGAAATCGGAATGATGAGAAGTATGTATCAACTCGATTTGTCTGGGAACTCTCTCACTGGTAAAATCCCACAGACAATTGGAAACTTGAGCAATTTACAATATCTTTACCTTTATGCAAACTATCTCACAGGTCCCATTCCAAATGAAATTGGAAAACTCTATTATCTTACCACAATTCAGTTGTTAGATAACAGCCTCTCTGGGCCAATCCCACCTTCCATAGGTAACTTGGTCAATTTAGGCTCCATTTTGATAAATTACAATAATTTCTCTGGGCCAATCCCATCTTCCATTGGTAACTTGGTGAATTTGGAATCTATTGACATGTCTAACAATAAACTTAATGGCAACCTTCCGACCGAAATGAATGTGCTCACCAATTTGGAACACTTGCAATTAGCTGATAATGATTTCACTGGTCAGTTGCCTCACAACATTTGCACTGGTGGAAAGCTGCAACACTTTGCTGTTATGAATAACCACTTCACAGGCCTAGTCCCAACGAGTTTGAAGAATTGCTCTAGCCTTATAAGAGTAAGGCTTGAACATAACCAACTGACTGGAAATATAACAGATGGTTTTGGATCATATCCAAATTTAGACTACATGGGATTAAGTGGAAATAAATTTTATGGCCACCTTTCAACCAATTGGGGAAAGTGCTATAGCCTGGCAAGCGTCAATATGTCCAACAATAATATATCAGGAGGTATACCACCAGAAATAGGCGAGGCAGCCAAGCTGGGTTTACNTGACTTGTCTTCAAACCATCTCACAGGAAGAATTCCAAAGGAGTTAGGTAAACTGACTTCATTGATCAAACTCGTCATAAGCCACAACCATCTTTCAGGAAACGTTCCTGCACAAATAGCATCATTACAGGAACTCAATTCCTTGGATCTTGCAGCAAATTATTTAAGCGGCTCCATCTCAAANGAACTTGGAAGGTTGTCCAAGTTATGGAATCTGAATTTGAGCCAAAACAGATTTGATGGACATATTCCTGTTGAGTTTGGCCAATTGGAAGCTCTTCAATTTCTTGATCTTAGTGGGAATTTTTTGAATGGAACAATACAATCAATGCTTGGACAGTTGACACACTTGGAAACATTGAATCTCTCACATAATAATCTTTCTGGCCTCATTCCCTCTAGCTTCGATCAGATGATCAGCTTGACATCTGTTGATATCTCATATAACCAACTGGAGGGTCCACTTCCAAACATTAATCCAGCTTTCCATAATGCTACAATTGAAGTGTTGAGAAATAATAAAGGCTTGTGCGGTAATGTCTCTGGCTTGAAGCCTTGCCCAACCCCAACATCAAGTGGTAAATCTCATAATCACCAGATTGACAAAGTTTTGTTGATAGTTTTACCGCTTACAATGGGAACTCTAATATTAGCATTAGTTGTTTTCAAACTCTCGTATCACTACNTTTGCCAAACTTCAACCACAGAAGAATACCATGTTGCGGAATCACAAGCTCAAAATTTATTTGCAATATGGAGTTTTGATGGCAAAATGGNGTATGAGAACATTATTGAANCCACNGAAGAGTTTAATGATAAACATCTCATTGGAGTTGGAGGGCAAGGAAGTGTTTACAAAGCAGAGTTGCACACGGGTCAAGTAGTTGCTGTGAAGAAACTTCATTCAGTGCCAAATGGAGAAACAGAAATTTCCAATCTAAAAGCTTTCAAAAGTGAGATCCAAGCTCTGACTGAAATCAGACATCATAACATTGTGAAGTTATATGGTTTTTGTTCACATCCACGATTCTCATTTTTGGTTTATGAGTTCTTGGAGAAAGGTAGTGTGGATATGACTTTGAAAGATGGCGAACAAGCAGTTGCATTTGACTGGAATAAGAGGGTGAATGGCATTAAAGATGTAGCCAGTGCTTTATGCTATATGCACCATGATTGCTCNCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTAGATTTGGAANANGTGGCTCATATCTCTGACTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAGCCAATTGGACCTCATTTGCAGGCACCTTTGGATACGCTGCTCCAGAACTTGCATACACAATGGAAGTCAATGAGAAATGTGACGTGTANAGTTTTGGGGTATTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGATGTTATGTCCGATTCCATGTTATCATCTTCATGGGCTAGCATGGCCTCAACACTTGANATTGTGCCATTGATGGATAAATTGGATCAACGTCTCCCTCGTCCTTTAAATCCTATTGTNAAGGAGTTANCATCAATTGTAAGGATAGCAATTGCCTGCTTGACTGAAAGTCCACGTTCTCGCCCTACNATGGAGCAGGTTGCCAAGGAGNTTGTAATGTNATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03027	1783	5215	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003027s00040339.1	PF00560.28	LRR_1	86	108	0.77
Glyur003027s00040339.1	PF13504.1	LRR_7	133	147	7.2
Glyur003027s00040339.1	PF00560.28	LRR_1	159	177	0.31
Glyur003027s00040339.1	PF00560.28	LRR_1	187	205	0.7
Glyur003027s00040339.1	PF13516.1	LRR_6	301	323	0.47
Glyur003027s00040339.1	PF13855.1	LRR_8	519	578	4.00E-12
Glyur003027s00040339.1	PF00069.20	Pkinase	700	972	2.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.151
SRR1783600	control	0.223
SRR1783602	moderate drought stress	0.312
SRR1811619	moderate drought stress	0.268

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.074
DRR006520	Root Summer glycyrrhizin high producing strain	0.073
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.072
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.037
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.077
SRR2868004	Drought Stress(Tissue:root)	0.034
SRR2967015	Control (Tissue:root)	0.079

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.577
SRR9715740	Leave	0.562
SRR9715741	Leave	1.466
SRR9715739	Root	0.034
SRR9715742	Root	0.276
SRR9715743	Root	0.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.222
SRR8749028	MeJA induced 9h	0.300
SRR8749029	MeJA induced 9h	0.221
SRR8749030	Uninduced	0.107
SRR8749031	Uninduced	0.097
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.329
SRR8400027	Control-Root	0.624