Gene detail information of Glyur003027s00040343.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08850.1 | 0 | Leucine-rich repeat receptor-like protein kinase family protein |
| NR | XP_003589790.1 | 0 | Receptor-like protein kinase [Medicago truncatula] |
| COG | YP_004775215.1 | 1.00E-63 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q8VZG8|Y4885_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor) |
| trEMBL | tr|G7ICI8|G7ICI8_MEDTR | 0 | LRR receptor-like kinase family protein {ECO:0000313|EMBL:AES60041.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03027 | 22172 | 28147 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003027s00040343.1 | PF08263.7 | LRRNT_2 | 43 | 80 | 1.40E-07 |
| Glyur003027s00040343.1 | PF00560.28 | LRR_1 | 206 | 228 | 0.18 |
| Glyur003027s00040343.1 | PF00560.28 | LRR_1 | 254 | 276 | 0.14 |
| Glyur003027s00040343.1 | PF00560.28 | LRR_1 | 302 | 320 | 0.57 |
| Glyur003027s00040343.1 | PF13516.1 | LRR_6 | 516 | 538 | 1.1 |
| Glyur003027s00040343.1 | PF00560.28 | LRR_1 | 545 | 564 | 1.1 |
| Glyur003027s00040343.1 | PF12799.2 | LRR_4 | 639 | 677 | 1.80E-08 |
| Glyur003027s00040343.1 | PF07714.12 | Pkinase_Tyr | 814 | 909 | 5.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.090 |
| SRR1783600 | control | 0.051 |
| SRR1783602 | moderate drought stress | 0.171 |
| SRR1811619 | moderate drought stress | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.017 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.149 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.084 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.036 |
| SRR2967015 | Control (Tissue:root) | 0.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.210 |
| SRR9715740 | Leave | 4.380 |
| SRR9715741 | Leave | 3.082 |
| SRR9715739 | Root | 0.017 |
| SRR9715742 | Root | 0.818 |
| SRR9715743 | Root | 0.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.019 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.076 |
| SRR8749030 | Uninduced | 0.084 |
| SRR8749031 | Uninduced | 0.120 |
| SRR8749032 | Uninduced | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.373 |
| SRR8400027 | Control-Root | 0.698 |