Gene detail information of Glyur003038s00039642.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26300.13.00E-35Arginyl-tRNA synthetase, class Ic
NRXP_006572930.13.05E-48PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Glycine max]
COGYP_001359505.14.00E-19arginyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
trEMBLtr|I1J4G6|I1J4G6_SOYBN1.00E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G00940.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03038130423+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01887RARS, argS EC:6.1.1.19 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006420  arginyl-tRNA aminoacylation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004814  arginine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003038s00039642.1PF00750.14tRNA-synt_1d36796.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.584
SRR1783600control3.634
SRR1783602moderate drought stress5.636
SRR1811619moderate drought stress5.363

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.773
DRR006520Root Summer glycyrrhizin high producing strain2.799
DRR006521Root Winter glycyrrhizin high producing strain3.093
DRR006522Root Winter glycyrrhizin high producing strain2.943
DRR006523Root Summer glycyrrhizin low producing strain5.384
DRR006524Root Summer glycyrrhizin low producing strain5.404
DRR006525Leaf Summer glycyrrhizin high producing strain4.055
DRR006526Leaf Summer glycyrrhizin high producing strain4.269

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.525
SRR2868004Drought Stress(Tissue:root)1.787
SRR2967015Control (Tissue:root)1.877

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.866
SRR9715740Leave2.840
SRR9715741Leave2.911
SRR9715739Root0.364
SRR9715742Root1.849
SRR9715743Root1.861

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.367
SRR8749028MeJA induced 9h12.138
SRR8749029MeJA induced 9h3.245
SRR8749030Uninduced9.041
SRR8749031Uninduced6.832
SRR8749032Uninduced4.153

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.775
SRR8400027Control-Root3.822

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved