Gene detail information of Glyur003038s00039643.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26300.15.00E-16Arginyl-tRNA synthetase, class Ic
NRKEH27228.16.16E-27cytoplasmic-like arginine-tRNA ligase [Medicago truncatula]
COGNP_681615.14.00E-12arginyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
trEMBLtr|A0A072UDN7|A0A072UDN7_MEDTR2.00E-27Cytoplasmic-like arginine-tRNA ligase {ECO:0000313|EMBL:KEH27228.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03038914516235-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01887RARS, argS EC:6.1.1.19 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006420  arginyl-tRNA aminoacylation


molecular_function

GO:0004814  arginine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003038s00039643.1PF00750.14tRNA-synt_1d8681.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.162
SRR1783600control2.903
SRR1783602moderate drought stress4.758
SRR1811619moderate drought stress6.527

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.997
DRR006520Root Summer glycyrrhizin high producing strain5.926
DRR006521Root Winter glycyrrhizin high producing strain3.950
DRR006522Root Winter glycyrrhizin high producing strain4.881
DRR006523Root Summer glycyrrhizin low producing strain13.882
DRR006524Root Summer glycyrrhizin low producing strain7.673
DRR006525Leaf Summer glycyrrhizin high producing strain4.504
DRR006526Leaf Summer glycyrrhizin high producing strain5.039

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.107
SRR2868004Drought Stress(Tissue:root)0.908
SRR2967015Control (Tissue:root)0.117

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.137
SRR9715740Leave0.077
SRR9715741Leave0.377
SRR9715739Root0.009
SRR9715742Root0.047
SRR9715743Root0.393

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.303
SRR8749028MeJA induced 9h1.109
SRR8749029MeJA induced 9h1.153
SRR8749030Uninduced0.625
SRR8749031Uninduced1.123
SRR8749032Uninduced2.795

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.299
SRR8400027Control-Root0.356

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved