Gene detail information of Glyur003041s00039053.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G53025.12.00E-100Ubiquitin-conjugating enzyme family protein
NRXP_004511247.10PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like [Cicer arietinum]
Swissprottr|Q8GY87|UBC26_ARATH2.00E-115Probable ubiquitin-conjugating enzyme E2 26
trEMBLtr|G7LCW1|G7LCW1_MEDTR0Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:AET02986.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0304125578532+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10581UBE2O EC:2.3.2.24 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003041s00039053.1PF00179.21UQ_con4846036.60E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.022
SRR1783600control17.977
SRR1783602moderate drought stress14.025
SRR1811619moderate drought stress14.018

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.335
DRR006520Root Summer glycyrrhizin high producing strain16.207
DRR006521Root Winter glycyrrhizin high producing strain25.745
DRR006522Root Winter glycyrrhizin high producing strain25.644
DRR006523Root Summer glycyrrhizin low producing strain14.401
DRR006524Root Summer glycyrrhizin low producing strain14.056
DRR006525Leaf Summer glycyrrhizin high producing strain10.588
DRR006526Leaf Summer glycyrrhizin high producing strain10.492

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.891
SRR2868004Drought Stress(Tissue:root)22.508
SRR2967015Control (Tissue:root)21.052

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.644
SRR9715740Leave13.008
SRR9715741Leave14.222
SRR9715739Root7.279
SRR9715742Root15.558
SRR9715743Root16.861

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.321
SRR8749028MeJA induced 9h35.845
SRR8749029MeJA induced 9h13.642
SRR8749030Uninduced18.126
SRR8749031Uninduced14.952
SRR8749032Uninduced9.273

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.286
SRR8400027Control-Root20.860

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved