Gene detail information of Glyur003050s00045692.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23890.1 | 3.00E-37 | topoisomerase II |
| NR | AES69522.2 | 1.23E-44 | DNA topoisomerase IV subunit A [Medicago truncatula] |
| COG | YP_001338882.1 | 8.00E-07 | DNA gyrase subunit B [Marinomonas sp. MWYL1] |
| Swissprot | tr|O24308|TOP2_PEA | 1.00E-46 | DNA topoisomerase 2 |
| trEMBL | tr|G7IWV9|G7IWV9_MEDTR | 5.00E-45 | DNA topoisomerase 2 {ECO:0000256|RuleBase:RU000381} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03050 | 22383 | 23647 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03164 | TOP2 | EC:5.99.1.3 | Platinum drug resistance | map01524 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003050s00045692.1 | PF05691.7 | Raffinose_syn | 95 | 130 | 1.90E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.190 |
| SRR1783600 | control | 0.084 |
| SRR1783602 | moderate drought stress | 0.083 |
| SRR1811619 | moderate drought stress | 0.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.217 |
| SRR9715740 | Leave | 0.235 |
| SRR9715741 | Leave | 0.262 |
| SRR9715739 | Root | 0.189 |
| SRR9715742 | Root | 0.201 |
| SRR9715743 | Root | 0.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.005 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.148 |
| SRR8400027 | Control-Root | 2.688 |