Gene detail information of Glyur003060s00043860.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80560.1 | 1.00E-17 | isopropylmalate dehydrogenase 2 |
| NR | ACJ84279.1 | 1.02E-19 | unknown [Medicago truncatula] |
| COG | YP_007216368.1 | 6.00E-20 | 3-isopropylmalate dehydrogenase [Thioalkalivibrio nitratireducens DSM 14787] |
| Swissprot | tr|P93832|LEU32_ARATH | 5.00E-20 | 3-isopropylmalate dehydrogenase 2, chloroplastic (Precursor) |
| trEMBL | tr|B7FHQ0|B7FHQ0_MEDTR | 4.00E-20 | 3-isopropylmalate dehydrogenase {ECO:0000256|RuleBase:RU004445} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03060 | 9109 | 12760 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003060s00043860.1 | PF00180.15 | Iso_dh | 25 | 55 | 1.80E-05 |
| Glyur003060s00043860.1 | PF00180.15 | Iso_dh | 83 | 126 | 7.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.086 |
| SRR1783600 | control | 3.448 |
| SRR1783602 | moderate drought stress | 9.508 |
| SRR1811619 | moderate drought stress | 9.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.152 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.415 |
| SRR2967015 | Control (Tissue:root) | 0.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.070 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.145 |
| SRR8749028 | MeJA induced 9h | 0.122 |
| SRR8749029 | MeJA induced 9h | 0.125 |
| SRR8749030 | Uninduced | 0.548 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.865 |
| SRR8400027 | Control-Root | 17.422 |