Gene detail information of Glyur003068s00036760.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01180.14.00E-29starch synthase 2
NRACL98484.14.70E-40starch synthase IIb precursor [Vigna unguiculata]
Swissprottr|Q43847|SSY2_SOLTU4.00E-36Granule-bound starch synthase 2, chloroplastic/amyloplastic (Precursor)
trEMBLtr|B9VJT1|B9VJT1_VIGUN2.00E-40Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold030681957121158+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00703glgA EC:2.4.1.21 Starch and sucrose metabolism map00500
Biofilm formation - Escherichia colimap02026


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003068s00036760.1PF08323.6Glyco_transf_5311251.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.087
SRR1783600control1.039
SRR1783602moderate drought stress2.532
SRR1811619moderate drought stress2.504

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.092
DRR006520Root Summer glycyrrhizin high producing strain1.773
DRR006521Root Winter glycyrrhizin high producing strain0.962
DRR006522Root Winter glycyrrhizin high producing strain1.017
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.360
DRR006526Leaf Summer glycyrrhizin high producing strain0.566

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.793
SRR2868004Drought Stress(Tissue:root)0.133
SRR2967015Control (Tissue:root)0.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.049
SRR9715740Leave2.504
SRR9715741Leave0.701
SRR9715739Root0.393
SRR9715742Root1.030
SRR9715743Root0.326

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.859
SRR8749028MeJA induced 9h1.205
SRR8749029MeJA induced 9h1.122
SRR8749030Uninduced0.497
SRR8749031Uninduced1.059
SRR8749032Uninduced0.972

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.073
SRR8400027Control-Root3.925

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved