Gene detail

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Gene detail information of Glyur003070s00039565.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56370.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_007134721.1	0	hypothetical protein PHAVU_010G070400g [Phaseolus vulgaris]
COG	YP_004775215.1	1.00E-44	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|V7AN73\|V7AN73_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06715.1}

Sequence

Transcript Sequence

>Glyur003070s00039565.1
ATGAAGCAAGTGCAATTCATCCTATCCTTGTTGTTTCTTGTTCATTTTGGTCCATTCCTAGTGATCTCAATAGACCAAGGAGCTTTCAACGAGGATGTATTGGGGTTGATTGTGTTCAAGGAAGGTCTAGAAGACCCAAAAGGAAAANTCTCCACATGGAATGAAGATGATTATAGTCCCTGCAACTGGGATGGTGTAAAATGTGACCCTTCAACCAATAGGGTATCTTCTCTTGTCCTTGATGGATTCTCTCTTTCTGGGCATATTGGTAGAGGGCTTCTCAGATTGCAATTCCTTCAAATTCTTTCCCTTTCTAGGAACAACTTCACAGGGACCATAAACCCTGACCTTCTTACTCTTTGGAATCTAAAAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGGCCAATCCCAGATGGACTTTTCAGGCAATGTTGGTCTCTCAGAGTGGTATCATTTGCCAAAAACAACCTCACAGGTAAGATTCCTGATTCCTTGAGTTCCTGCTTCTCATTGGCAACTGTGAACTTTTCTTCTAATAAGCTAAGTGGGGAATTGCCATCTGGGATGTGGTTTCTGAGGGAGCTGCAGTCACTTGATCTTTCAACTAACTTGATGGAGGGAGATGTTCCTGAAGGAATTCAGAATCTGTATGATTTGAGGGAGTTAAGGTTAGGGAAGAATCACTTCACTGGTAGGATTCCTGAGGACATTGGAAGCTGTTTGCTTTTGAAGGTGGTTGATTTCAGTGGTAATCTTCTCTCTGGGGAACTTCCTGAGTCAATTCAAAGACTCACCTCATGCACATTCCTCAGCTTGCAAGGGAACTCATTCACAGGAGGCATTCCAAGTTGGATTGGAGAGTTGGAAAATCTAGAGACATTGGATCTTTCTTCTAATANATTCTCTGGTCAGATTCCAGAATCAATAGGGAATCTTGAATCTCTGAGTAGATTGAATCTGTCATGGAATCAGATCACAGGAGACCTACCAGAGTTAATGGTAAACTGCATTAGTCTTTTGACTCTTGATATCAGCCACAATCTCTTGTCAGGTTTTCTTTCTCCATGGATATTTAGGATGGGTATACAAAGCATCTCACTTTCTGGGAGCAGCTTCAGTAAGGGAAACTCTTCTCCACTTACTTCCTTATTACCTGTGTCTTATCATGGTCTTCAAGTTTTGGATTTGTCATCAAATGCTATTTNTGGCAGACTTCCATCTGGCATTGGAGGTCTTAGAAGCTTGCAAGTTTTGAATTTGTCCACCAACAATATCTCTGGTTCTATTCCAGTNAGTATAGGAGAACTCAAATCTTTGTACATTCTTGACTTGAGTGATAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAATTTCACTTAGTGAGCTAAGGCTACAAAAGAATATCTTAGACCTAACCAATCTTCAACATGTAGATTTGTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTCACCCAGCTTTTCTCATTTAATGTTTCCCACAACCACCACCTTCAAGGGGAGCTACCAGTGGGCGGCTTCTTCAATACCATCACTCCCTCATCTGTTTCTGGTAATCCATTGTTATGTGGTTCTGCTGTTAACCACTCTTGCCCTTCTGTCCACCCAAAACCAATAGTCCTAAACCCAAATTCTCCTCACTCAAACAACTCCAGGGCTTCCTTACAGAAAAACCATCNTCATCATAAGATAATGCTCAGCATNTCTGTCCTTATTGCTNTTGGAGGAGCTATCTCAATTGCCATTGGTGTGGTGGCTGTTACCCTCCTGAATATCCATGTGAGNTCTCCAATGTCACATTCTGCTGCTCCATTTGCATTCTCTGGTGTTGGTGAGGACTATAATAGTTGCTCCCCTACAACCAATGATCCAAAAAACCATGGCAAGCTTGTTATGTTTACTGGTGGTGGTGATGCTGACTTTACTGACGATGGTGTTCACAATCTTCTTCACAAAGACAGCGAGATTGGTCGTGGNGGATTTGGAATTGTTTATTGTGTTGCCCTTCGAGATGGGAACTCTTTTAAGGCAATCAAGAAGCTTACANTGTCCACTTTGACCAAGTCCCAAGAAGACTTTGAGAAGGAGGTTAATAGACTTGGGAAGATAAGGCACAACAATCTTGTGCCACTTGAAGGTTATTACTGGACTTGTTCCTTGCAGCTACTTATTTATGAGTACCTACCTAGAGGGAGTTTGCACAAGCTTCTACATGATGAAAATAGCAACACTGTGTTTTCTTGGAGGCAAAGGTTCAAGATTGTTTTAGGAATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATTCATTACAATCTAAAATCAACAAATGTTTTGATTGATTGTTCTGATGAGGCAANGATAGGAGATTTTGGCCTTGTGAGGCTACTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAGATTCAGAGTGCACTTGGATACATGGCACCTGAGTTCGCTTGCCGCACGGTTAACATAACTGATAAATGTGACGTATATGGTTTTGGGATCCTGGTTCTTGAGGTGGTGACAGGGAGAAGACCTGTGGAATATTTGGAGGATGATGTGGNTGTTCTCTGTGACATGGTGAGGGGTGCATTGGAGGAAGGCAAGGTGGAGCAATGTGTTGATGAGAAGCTTATGGGTGATTTTGCTGCAGAGGAAGCAATCCCTGTNATTAAATTGGGTTTAGTTTGTGCATCACAAGTACCATCAAATCGTCCAAATATGGATGAGGTAGTCAACATATTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGGATTACAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03070	15298	18593	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003070s00039565.1	PF08263.7	LRRNT_2	30	69	7.30E-10
Glyur003070s00039565.1	PF13855.1	LRR_8	122	182	6.80E-07
Glyur003070s00039565.1	PF12799.2	LRR_4	290	333	2.10E-08
Glyur003070s00039565.1	PF12799.2	LRR_4	392	429	2.10E-07
Glyur003070s00039565.1	PF00560.28	LRR_1	439	459	0.86
Glyur003070s00039565.1	PF00560.28	LRR_1	478	500	0.097
Glyur003070s00039565.1	PF00069.20	Pkinase	667	933	6.90E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.357
SRR1783600	control	0.365
SRR1783602	moderate drought stress	0.337
SRR1811619	moderate drought stress	0.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.355
DRR006520	Root Summer glycyrrhizin high producing strain	1.342
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.989
DRR006524	Root Summer glycyrrhizin low producing strain	1.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.097
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.096

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.599
SRR2868004	Drought Stress(Tissue:root)	3.373
SRR2967015	Control (Tissue:root)	3.587

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.550
SRR9715740	Leave	0.003
SRR9715741	Leave	0.056
SRR9715739	Root	0.538
SRR9715742	Root	1.042
SRR9715743	Root	0.939

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.026
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.021
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.868
SRR8400027	Control-Root	3.017