Gene detail information of Glyur003073s00037978.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24830.12.00E-12arginosuccinate synthase family
NRXP_007146550.11.08E-13hypothetical protein PHAVU_006G050100g [Phaseolus vulgaris]
COGYP_003703479.16.00E-13argininosuccinate synthase [Syntrophothermus lipocalidus DSM 12680]
Swissprottr|Q9SZX3|ASSY_ARATH9.00E-14Argininosuccinate synthase, chloroplastic (Precursor)
trEMBLtr|V7BKM7|V7BKM7_PHAVU4.00E-14Uncharacterized protein {ECO:0000313|EMBL:ESW18544.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold030731712121208-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01940argG, ASS1 EC:6.3.4.5 Biosynthesis of amino acids map01230
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Fluid shear stress and atherosclerosismap05418


Gene Ontology

biological_process

GO:0006526  arginine biosynthetic process


molecular_function

GO:0004055  argininosuccinate synthase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003073s00037978.1PF00764.14Arginosuc_synth1201655.40E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.974
SRR1783600control1.213
SRR1783602moderate drought stress2.698
SRR1811619moderate drought stress2.736

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.165
DRR006520Root Summer glycyrrhizin high producing strain4.283
DRR006521Root Winter glycyrrhizin high producing strain6.265
DRR006522Root Winter glycyrrhizin high producing strain5.282
DRR006523Root Summer glycyrrhizin low producing strain4.301
DRR006524Root Summer glycyrrhizin low producing strain2.978
DRR006525Leaf Summer glycyrrhizin high producing strain2.745
DRR006526Leaf Summer glycyrrhizin high producing strain3.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.606
SRR2868004Drought Stress(Tissue:root)6.849
SRR2967015Control (Tissue:root)5.132

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.077
SRR9715740Leave1.108
SRR9715741Leave2.648
SRR9715739Root0.442
SRR9715742Root0.942
SRR9715743Root1.159

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.348
SRR8749028MeJA induced 9h5.827
SRR8749029MeJA induced 9h3.338
SRR8749030Uninduced2.874
SRR8749031Uninduced2.541
SRR8749032Uninduced2.292

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.603
SRR8400027Control-Root7.145

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved