Gene detail information of Glyur003084s00034088.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G23820.11.00E-63spermidine synthase 1
NRKEH19965.19.33E-105spermidine synthase [Medicago truncatula]
COGYP_007081448.15.00E-40spermidine synthase [Pleurocapsa sp. PCC 7327]
Swissprottr|Q9ZTR0|SPD2_PEA3.00E-104Spermidine synthase 2
trEMBLtr|A0A072U2G1|A0A072U2G1_MEDTR3.00E-105Spermidine synthase {ECO:0000313|EMBL:KEH19965.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0308454499560+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00797speE, SRM EC:2.5.1.16 Cysteine and methionine metabolism map00270
Arginine and proline metabolismmap00330
beta-Alanine metabolismmap00410
Glutathione metabolismmap00480


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003084s00034088.1PF01564.12Spermine_synth711821.30E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.932
SRR1783600control3.019
SRR1783602moderate drought stress1.138
SRR1811619moderate drought stress1.182

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.022
DRR006520Root Summer glycyrrhizin high producing strain13.709
DRR006521Root Winter glycyrrhizin high producing strain1.176
DRR006522Root Winter glycyrrhizin high producing strain1.261
DRR006523Root Summer glycyrrhizin low producing strain8.300
DRR006524Root Summer glycyrrhizin low producing strain8.339
DRR006525Leaf Summer glycyrrhizin high producing strain9.883
DRR006526Leaf Summer glycyrrhizin high producing strain9.851

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.889
SRR2868004Drought Stress(Tissue:root)18.821
SRR2967015Control (Tissue:root)17.864

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.792
SRR9715740Leave6.862
SRR9715741Leave8.563
SRR9715739Root2.231
SRR9715742Root13.199
SRR9715743Root11.671

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.718
SRR8749028MeJA induced 9h2.751
SRR8749029MeJA induced 9h2.244
SRR8749030Uninduced1.983
SRR8749031Uninduced0.527
SRR8749032Uninduced0.876

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.415
SRR8400027Control-Root43.067

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved