Gene detail information of Glyur003089s00042904.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27290.1 | 1.00E-145 | S-locus lectin protein kinase family protein |
| NR | XP_007133113.1 | 0 | hypothetical protein PHAVU_011G152400g [Phaseolus vulgaris] |
| COG | YP_003266597.1 | 3.00E-06 | serine/threonine protein kinase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|O81832|Y4729_ARATH | 1.00E-178 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor) |
| trEMBL | tr|V7AHL4|V7AHL4_PHAVU | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03089 | 20510 | 23100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.7.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003089s00042904.1 | PF01453.19 | B_lectin | 73 | 195 | 4.70E-28 |
| Glyur003089s00042904.1 | PF00954.15 | S_locus_glycop | 224 | 330 | 6.50E-31 |
| Glyur003089s00042904.1 | PF08276.6 | PAN_2 | 352 | 420 | 2.00E-20 |
| Glyur003089s00042904.1 | PF07714.12 | Pkinase_Tyr | 517 | 599 | 1.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.719 |
| SRR1783600 | control | 0.685 |
| SRR1783602 | moderate drought stress | 0.940 |
| SRR1811619 | moderate drought stress | 0.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.012 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.226 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.219 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.423 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.067 |
| SRR9715740 | Leave | 3.003 |
| SRR9715741 | Leave | 1.004 |
| SRR9715739 | Root | 0.679 |
| SRR9715742 | Root | 1.008 |
| SRR9715743 | Root | 0.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.098 |
| SRR8400027 | Control-Root | 5.241 |