Gene detail information of Glyur003089s00042906.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65790.1 | 7.00E-50 | receptor kinase 1 |
| NR | XP_007133113.1 | 5.71E-91 | hypothetical protein PHAVU_011G152400g [Phaseolus vulgaris] |
| Swissprot | tr|Q39086|SD17_ARATH | 3.00E-57 | Receptor-like serine/threonine-protein kinase SD1-7 (Precursor) |
| trEMBL | tr|V7AHL4|V7AHL4_PHAVU | 2.00E-91 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03089 | 23167 | 24214 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.7.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003089s00042906.1 | PF07714.12 | Pkinase_Tyr | 16 | 121 | 6.00E-10 |
| Glyur003089s00042906.1 | PF11883.3 | DUF3403 | 125 | 169 | 1.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.867 |
| SRR1783600 | control | 0.914 |
| SRR1783602 | moderate drought stress | 1.645 |
| SRR1811619 | moderate drought stress | 1.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.227 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.019 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.979 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.709 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.801 |
| SRR9715740 | Leave | 3.774 |
| SRR9715741 | Leave | 2.402 |
| SRR9715739 | Root | 0.463 |
| SRR9715742 | Root | 0.585 |
| SRR9715743 | Root | 0.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.131 |
| SRR8400027 | Control-Root | 5.092 |