Gene detail information of Glyur003091s00037488.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19010.1 | 0 | AMP-dependent synthetase and ligase family protein |
| NR | KHN40402.1 | 0 | 4-coumarate--CoA ligase-like 6 [Glycine soja] |
| COG | YP_007042205.1 | 3.00E-103 | putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229] |
| Swissprot | tr|Q84P24|4CLL6_ARATH | 0 | 4-coumarate--CoA ligase-like 6 |
| trEMBL | tr|I1J4L4|I1J4L4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G01350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03091 | 25009 | 29546 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003091s00037488.1 | PF00501.23 | AMP-binding | 59 | 446 | 1.60E-82 |
| Glyur003091s00037488.1 | PF13193.1 | AMP-binding_C | 456 | 530 | 4.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.524 |
| SRR1783600 | control | 0.565 |
| SRR1783602 | moderate drought stress | 0.209 |
| SRR1811619 | moderate drought stress | 0.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.345 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.832 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.805 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.195 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.316 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.759 |
| SRR2967015 | Control (Tissue:root) | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.080 |
| SRR9715740 | Leave | 48.832 |
| SRR9715741 | Leave | 28.075 |
| SRR9715739 | Root | 0.035 |
| SRR9715742 | Root | 0.141 |
| SRR9715743 | Root | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.372 |
| SRR8749028 | MeJA induced 9h | 5.956 |
| SRR8749029 | MeJA induced 9h | 4.832 |
| SRR8749030 | Uninduced | 0.202 |
| SRR8749031 | Uninduced | 1.020 |
| SRR8749032 | Uninduced | 0.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.720 |
| SRR8400027 | Control-Root | 1.433 |