Gene detail information of Glyur003098s00042656.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G53240.13.00E-153Lactate/malate dehydrogenase family protein
NRNP_001276183.10malate dehydrogenase, mitochondrial-like [Glycine max]
COGNP_931711.12.00E-112malate dehydrogenase [Photorhabdus luminescens subsp. laumondii TTO1]
Swissprottr|P83373|MDHM_FRAAN0Malate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|I1KDM8|I1KDM8_SOYBN0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03098933913187-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00026MDH2 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003098s00042656.1PF00056.18Ldh_1_N351775.10E-47
Glyur003098s00042656.1PF02866.13Ldh_1_C1793425.90E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control137.868
SRR1783600control138.708
SRR1783602moderate drought stress88.370
SRR1811619moderate drought stress87.984

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain177.515
DRR006520Root Summer glycyrrhizin high producing strain175.583
DRR006521Root Winter glycyrrhizin high producing strain120.167
DRR006522Root Winter glycyrrhizin high producing strain117.351
DRR006523Root Summer glycyrrhizin low producing strain119.912
DRR006524Root Summer glycyrrhizin low producing strain120.294
DRR006525Leaf Summer glycyrrhizin high producing strain137.059
DRR006526Leaf Summer glycyrrhizin high producing strain136.595

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)391.773
SRR2868004Drought Stress(Tissue:root)240.925
SRR2967015Control (Tissue:root)225.039

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave296.274
SRR9715740Leave305.969
SRR9715741Leave261.613
SRR9715739Root300.356
SRR9715742Root249.989
SRR9715743Root254.238

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h254.996
SRR8749028MeJA induced 9h178.055
SRR8749029MeJA induced 9h168.600
SRR8749030Uninduced58.362
SRR8749031Uninduced46.159
SRR8749032Uninduced69.138

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root298.616
SRR8400027Control-Root270.628

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved